Variant report

Variant	rs28626711
Chromosome Location	chr14:64988279-64988280
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64988143..64990019-chr14:65005055..65006993,2	MCF-7	breast:
2	chr14:64986499..64988799-chr14:64989705..64991452,2	MCF-7	breast:
3	chr14:64972191..64974986-chr14:64988003..64989901,3	MCF-7	breast:
4	chr14:64981930..64983904-chr14:64987033..64989897,3	MCF-7	breast:
5	chr14:64987035..64989680-chr14:64995490..64997427,2	MCF-7	breast:

Extended variants
information (count: 66 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10131155	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10132424	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10133243	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133411	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133696	0.81[ASN][1000 genomes]
rs10138256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142835	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142879	0.90[ASN][1000 genomes]
rs10143170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144661	0.81[EUR][1000 genomes]
rs10149286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150987	0.81[EUR][1000 genomes]
rs10873173	0.90[ASN][1000 genomes]
rs11158543	0.83[ASN][1000 genomes]
rs11158544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623457	0.88[ASN][1000 genomes]
rs11625265	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11628221	0.90[ASN][1000 genomes]
rs11847054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848179	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11851236	0.83[ASN][1000 genomes]
rs12050238	0.90[ASN][1000 genomes]
rs12050358	0.90[ASN][1000 genomes]
rs12385910	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12385918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586212	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589947	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453007	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1453009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470851	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17101896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966865	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1980519	0.90[ASN][1000 genomes]
rs1980520	0.90[ASN][1000 genomes]
rs1982440	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2198347	0.90[ASN][1000 genomes]
rs28446048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28469649	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28666045	0.87[ASN][1000 genomes]
rs28730549	0.83[ASN][1000 genomes]
rs28738919	0.88[ASN][1000 genomes]
rs35451957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783722	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783724	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4632045	0.90[ASN][1000 genomes]
rs58893738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59440409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59512674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908674	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61615397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61985668	0.88[ASN][1000 genomes]
rs61985706	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61985707	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987034	0.81[EUR][1000 genomes]
rs61987035	0.81[EUR][1000 genomes]
rs7160634	0.85[ASN][1000 genomes]
rs73267743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73267744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs926803	0.83[ASN][1000 genomes]
rs9323452	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs28626711	ZBTB25	cis	multi-tissue	Pritchard
rs28626711	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs28626711	ZBTB25	cis	Nerve Tibial	GTEx
rs28626711	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
6	chr14:64974800-65006000	Weak transcription	Ovary	ovary
7	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
8	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
9	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr14:64976000-64995400	Weak transcription	Gastric	stomach
11	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
12	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
13	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
15	chr14:64977800-64988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
18	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr14:64978000-64988600	Weak transcription	Fetal Kidney	kidney
20	chr14:64978200-64988400	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr14:64978200-64988400	Weak transcription	Fetal Lung	lung
22	chr14:64978200-64989400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:64978400-64988400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr14:64978400-64988400	Weak transcription	HepG2	liver
26	chr14:64978400-64988600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
27	chr14:64978400-64992200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr14:64978400-64992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
29	chr14:64978600-64996200	Weak transcription	Brain Angular Gyrus	brain
30	chr14:64979200-64988800	Weak transcription	Spleen	Spleen
31	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
32	chr14:64979600-64988400	Weak transcription	NH-A	brain
33	chr14:64981800-64989000	Weak transcription	Brain Substantia Nigra	brain
34	chr14:64982000-64989400	Weak transcription	Aorta	Aorta
35	chr14:64982000-65005800	Weak transcription	Fetal Heart	heart
36	chr14:64982200-64988600	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:64983400-64993000	Weak transcription	Psoas Muscle	Psoas
38	chr14:64984000-64988400	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr14:64984000-64988800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr14:64984200-64989000	Weak transcription	Colon Smooth Muscle	Colon
41	chr14:64984800-64996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr14:64985000-64991000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr14:64985200-64988400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
44	chr14:64985400-64988400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
45	chr14:64985400-64988400	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr14:64985400-64988400	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr14:64985400-64990000	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr14:64986400-64988400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
49	chr14:64987000-64988400	Enhancers	Small Intestine	intestine
50	chr14:64987000-64990400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

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