Variant report

Variant	rs1980520
Chromosome Location	chr14:64959846-64959847
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr14:64959481-64960851	H1-neurons	neurons:	n/a	n/a
2	EP300	chr14:64959250-64960418	SK-N-SH	brain:	n/a	n/a
3	CTCF	chr14:64959760-64959910	HPF	lung:	n/a	n/a
4	MXI1	chr14:64959186-64960988	SK-N-SH	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr14:64958246..64960870-chr14:64967867..64972086,4	K562	blood:
2	chr14:64957408..64961833-chr14:64968982..64972745,8	MCF-7	breast:
3	chr14:64959822..64962033-chr14:64973410..64976563,3	K562	blood:

Variant related genes	Relation type
ZBTB25	TF binding region
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 99 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:99)

rs_ID	r²[population]
rs10131155	0.92[ASN][1000 genomes]
rs10131416	1.00[CEU][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10132424	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[ASN][1000 genomes]
rs10132969	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10133243	0.83[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs10133411	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10133696	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10133848	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10134530	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10136732	1.00[CEU][hapmap];1.00[GIH][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10138256	0.90[ASN][1000 genomes]
rs10142835	0.90[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10142879	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143170	0.90[ASN][1000 genomes]
rs10143839	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10144661	0.85[YRI][hapmap]
rs10145001	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10145005	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10145013	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147522	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10149286	1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10150781	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10873173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158542	1.00[CEU][hapmap];0.97[GIH][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs11158543	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158544	0.90[ASN][1000 genomes]
rs11623457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625265	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];0.91[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11627387	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11628221	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845653	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11847054	0.90[ASN][1000 genomes]
rs11848179	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849935	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11851236	1.00[CHB][hapmap];0.83[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050238	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050358	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385910	0.93[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs12385918	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs12586212	0.92[ASN][1000 genomes]
rs12588886	0.84[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs12589947	0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[ASN][1000 genomes]
rs1453004	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1453007	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453009	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1470851	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101896	0.90[ASN][1000 genomes]
rs1966865	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982440	0.93[CHB][hapmap];0.88[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2045024	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123459	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[LWK][hapmap];0.82[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.85[YRI][hapmap];1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2123460	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2198347	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281603	0.81[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs28446048	0.92[ASN][1000 genomes]
rs28469649	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626711	0.90[ASN][1000 genomes]
rs28666045	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28730549	1.00[CHB][hapmap];0.94[CHD][hapmap];0.92[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28738919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28766386	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28827477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35115595	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35451957	0.90[ASN][1000 genomes]
rs3742606	1.00[CEU][hapmap];0.97[GIH][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3742608	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3783722	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs3783723	0.92[ASN][1000 genomes]
rs3783724	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[ASN][1000 genomes]
rs3783727	0.83[EUR][1000 genomes]
rs4632045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57525201	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58893738	0.90[ASN][1000 genomes]
rs59213791	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59440409	0.91[ASN][1000 genomes]
rs59512674	0.90[ASN][1000 genomes]
rs59577187	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60908674	0.91[ASN][1000 genomes]
rs61615397	0.91[ASN][1000 genomes]
rs61985663	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61985668	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985706	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985707	0.92[ASN][1000 genomes]
rs61985711	0.90[ASN][1000 genomes]
rs6573559	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7160131	0.82[CEU][hapmap];0.81[GIH][hapmap];0.93[MEX][hapmap]
rs7160634	1.00[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73265639	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265640	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265641	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73267743	0.92[ASN][1000 genomes]
rs73267744	0.92[ASN][1000 genomes]
rs745686	0.87[GIH][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs926803	1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[GIH][hapmap];0.83[JPT][hapmap];0.94[MEX][hapmap];0.89[TSI][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323450	1.00[CEU][hapmap];0.85[TSI][hapmap]
rs9323451	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9323452	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs1980520	ZBTB25	cis	Nerve Tibial	GTEx
rs1980520	ZBTB1	cis	cerebellum	SCAN
rs1980520	ZBTB25	cis	lymphoblastoid	seeQTL
rs1980520	ZBTB25	cis	cerebellum	SCAN
rs1980520	ZBTB25	cis	multi-tissue	Pritchard
rs1980520	ZBTB25	cis	lung	GTEx
rs1980520	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs1980520	ZBTB1	cis	lymphoblastoid	seeQTL
rs1980520	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs1980520	ZBTB25	cis	parietal	SCAN

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
6	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
7	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr14:64953000-64960200	Weak transcription	K562	blood
9	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:64954600-64962000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr14:64954600-64966600	Weak transcription	HepG2	liver
12	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
13	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
15	chr14:64954600-64968400	Weak transcription	Gastric	stomach
16	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
17	chr14:64954800-64960600	Weak transcription	Ovary	ovary
18	chr14:64954800-64962000	Weak transcription	Aorta	Aorta
19	chr14:64954800-64966200	Weak transcription	Small Intestine	intestine
20	chr14:64954800-64966400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr14:64954800-64966400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
24	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
28	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:64955000-64961800	Weak transcription	Brain Angular Gyrus	brain
30	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
32	chr14:64955200-64961800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:64955200-64963600	Weak transcription	NH-A	brain
34	chr14:64955200-64964600	Weak transcription	A549	lung
35	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
36	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
37	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
39	chr14:64955400-64961800	Weak transcription	Colon Smooth Muscle	Colon
40	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
41	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
44	chr14:64955600-64960400	Weak transcription	Brain Anterior Caudate	brain
45	chr14:64955600-64961800	Weak transcription	Osteobl	bone
46	chr14:64955600-64968200	Weak transcription	Placenta	Placenta
47	chr14:64955600-64968200	Weak transcription	NHLF	lung
48	chr14:64955800-64968200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr14:64955800-64968400	Weak transcription	Brain Inferior Temporal Lobe	brain
50	chr14:64956000-64964600	Weak transcription	Fetal Lung	lung

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