Variant report

Variant	rs61985706
Chromosome Location	chr14:64976600-64976601
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64974117..64976754-chr14:65005899..65008393,2	MCF-7	breast:
2	chr14:64967941..64976890-chr14:65001097..65012463,31	MCF-7	breast:
3	chr14:64812043..64814935-chr14:64975290..64978233,2	K562	blood:

Variant related genes	Relation type
ENSG00000259160	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 97 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:96)

rs_ID	r²[population]
rs10131155	0.92[ASN][1000 genomes]
rs10131416	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10132424	0.83[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs10132969	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10133243	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs10133411	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10133696	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10133848	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10134530	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10136732	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10138256	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10142835	0.90[ASN][1000 genomes]
rs10142879	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143170	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10143839	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145001	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10145005	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10145013	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs10147522	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10149286	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10150781	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10873173	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158542	0.88[EUR][1000 genomes]
rs11158543	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158544	0.90[ASN][1000 genomes]
rs11623457	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625265	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626222	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11627387	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11628221	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11845653	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11847054	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11848179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849935	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11851236	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050238	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050358	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385910	0.89[ASN][1000 genomes]
rs12385918	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12586212	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs12588886	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12589947	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs1453004	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1453007	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453009	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1470851	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101896	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1966865	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980519	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980520	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982440	0.87[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2045024	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2123459	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123460	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2198347	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2281603	0.83[AFR][1000 genomes]
rs28446048	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28469649	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626711	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28666045	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28730549	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28738919	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28766386	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs28827477	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35115595	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs35451957	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3742606	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3742608	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3783722	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs3783723	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3783724	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs3783727	0.83[EUR][1000 genomes]
rs4632045	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57525201	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs58893738	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs59213791	0.87[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59440409	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs59512674	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs59577187	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs60908674	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61615397	0.96[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs61985663	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985668	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985707	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61985711	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs6573559	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7160634	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73265639	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73265640	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73265641	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73267743	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73267744	0.96[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs745686	0.83[EUR][1000 genomes]
rs926803	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323451	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9323452	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs61985706	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs61985706	ZBTB25	cis	lung	GTEx
rs61985706	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs61985706	ZBTB25	cis	Nerve Tibial	GTEx

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64977000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:64972800-64978800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr14:64972800-64979200	Enhancers	Small Intestine	intestine
4	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:64973000-64979400	Enhancers	Primary B cells from peripheral blood	blood
7	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
8	chr14:64973800-64977200	Weak transcription	Fetal Kidney	kidney
9	chr14:64973800-64977600	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr14:64973800-64978000	Enhancers	Skeletal Muscle Male	skeletal muscle
11	chr14:64973800-64978400	Enhancers	HepG2	liver
12	chr14:64973800-64979400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr14:64973800-64980000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr14:64974000-64984400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr14:64974200-64979400	Enhancers	Primary B cells from cord blood	blood
16	chr14:64974400-64977400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr14:64974400-64977800	Weak transcription	Fetal Lung	lung
18	chr14:64974400-64978000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
21	chr14:64974600-64977000	Enhancers	Primary T cells from cord blood	blood
22	chr14:64974600-64977400	Enhancers	Primary T killer memory cells from peripheral blood	blood
23	chr14:64974600-64978200	Enhancers	Primary T cells fromperipheralblood	blood
24	chr14:64974800-64976800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:64974800-64977000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
26	chr14:64974800-64977200	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:64974800-64977400	Enhancers	Primary T helper cells fromperipheralblood	blood
28	chr14:64974800-64977400	Weak transcription	Pancreatic Islets	Pancreatic Islet
29	chr14:64974800-64977600	Weak transcription	Brain Angular Gyrus	brain
30	chr14:64974800-64978400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr14:64974800-64978400	Weak transcription	NH-A	brain
32	chr14:64974800-64979200	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr14:64974800-64980000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
34	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
36	chr14:64974800-65006000	Weak transcription	Ovary	ovary
37	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
38	chr14:64975200-64977000	Weak transcription	Brain Anterior Caudate	brain
39	chr14:64975200-64977200	Weak transcription	Adipose Nuclei	Adipose
40	chr14:64975200-64977200	Weak transcription	Brain Substantia Nigra	brain
41	chr14:64975200-64977200	Weak transcription	Colon Smooth Muscle	Colon
42	chr14:64975200-64977400	Weak transcription	Rectal Smooth Muscle	rectum
43	chr14:64975200-64977400	Weak transcription	HUVEC	blood vessel
44	chr14:64975200-64977600	Enhancers	NHEK	skin
45	chr14:64975200-64978200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:64975200-64978400	Enhancers	Hela-S3	cervix
47	chr14:64975200-64987600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
48	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
49	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
50	chr14:64975400-64976800	Weak transcription	NHLF	lung

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