Variant report

Variant	rs10147522
Chromosome Location	chr14:64949196-64949197
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64947597..64950108-chr14:64953144..64955010,2	MCF-7	breast:
2	chr14:64942424..64944217-chr14:64947192..64949404,2	K562	blood:

Extended variants
information (count: 66 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10131416	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10132969	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10133696	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10133848	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10134530	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10136732	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10142879	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10143839	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10145001	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145005	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10145013	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10150781	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10873173	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11158542	0.83[EUR][1000 genomes]
rs11158543	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11623457	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11625265	0.85[EUR][1000 genomes]
rs11626222	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11627122	0.81[EUR][1000 genomes]
rs11627387	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11628221	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11845653	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11848179	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11849935	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11851236	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12050238	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12050358	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1453007	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1470851	0.89[EUR][1000 genomes]
rs1966865	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1980519	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1980520	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2045024	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2123459	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2123460	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2198347	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28469649	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28666045	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28730549	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28738919	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28766386	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28827477	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35115595	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3742606	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3742608	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs3783725	0.88[EUR][1000 genomes]
rs3783727	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4632045	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs57525201	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59577187	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61985663	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61985668	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61985706	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6573559	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7160634	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs73265639	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73265640	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73265641	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs745686	0.94[EUR][1000 genomes]
rs8016556	0.88[EUR][1000 genomes]
rs8022537	0.88[EUR][1000 genomes]
rs8022545	0.88[EUR][1000 genomes]
rs926803	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9323451	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9323452	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10147522	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs10147522	ZBTB25	cis	multi-tissue	Pritchard

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933000-64951000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:64933000-64951000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:64933000-64951600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:64933000-64951800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr14:64933000-64952000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr14:64933000-64953400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:64933000-64953600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr14:64933000-64953600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr14:64933000-64953600	Weak transcription	Lung	lung
10	chr14:64933000-64953600	Weak transcription	Ovary	ovary
11	chr14:64933000-64953600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr14:64933000-64953600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:64933000-64953600	Weak transcription	HSMM	muscle
14	chr14:64933000-64953600	Weak transcription	NHLF	lung
15	chr14:64933200-64951000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr14:64933200-64951000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr14:64933200-64951000	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:64933200-64951600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr14:64933200-64951800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr14:64933200-64953600	Weak transcription	Primary B cells from cord blood	blood
21	chr14:64933200-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:64933200-64953600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr14:64933200-64953600	Weak transcription	NHEK	skin
24	chr14:64933200-64953800	Weak transcription	Fetal Brain Female	brain
25	chr14:64933200-64953800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr14:64933400-64953600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr14:64933400-64953600	Weak transcription	Brain Hippocampus Middle	brain
29	chr14:64933400-64953600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
30	chr14:64933400-64953600	Weak transcription	Fetal Stomach	stomach
31	chr14:64933400-64953600	Weak transcription	NH-A	brain
32	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
33	chr14:64933600-64951600	Weak transcription	Brain Angular Gyrus	brain
34	chr14:64933600-64953600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chr14:64933800-64950600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr14:64934000-64953600	Weak transcription	Thymus	Thymus
37	chr14:64934200-64953800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr14:64934400-64951000	Weak transcription	Liver	Liver
39	chr14:64934400-64953600	Weak transcription	Adipose Nuclei	Adipose
40	chr14:64934800-64951800	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr14:64935200-64951200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:64935200-64951600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
43	chr14:64935400-64951600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr14:64935600-64951800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr14:64935600-64953600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
47	chr14:64938000-64951800	Weak transcription	Fetal Muscle Trunk	muscle
48	chr14:64938600-64951800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
49	chr14:64939000-64951800	Weak transcription	A549	lung
50	chr14:64939000-64953600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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