Variant report

Variant	rs6573559
Chromosome Location	chr14:64923166-64923167
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:64923030-64923230	GM12878	blood:	n/a	n/a
2	POLR2A	chr14:64921840-64924182	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64921748..64924792-chr14:64932173..64936095,3	K562	blood:

Variant related genes	Relation type
MTHFD1	TF binding region
ENSG00000179841	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 10 )

rSNPs within LD-proxies of this variant (count:72)

rs_ID	r²[population]
rs10131416	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10132969	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10133411	0.84[GIH][hapmap]
rs10133696	1.00[CEU][hapmap];1.00[GIH][hapmap];0.85[MEX][hapmap];0.94[TSI][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10133848	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10134530	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10136732	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10142879	1.00[CEU][hapmap];0.97[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10143839	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10145001	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10145005	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10145013	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10147522	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10150781	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10873173	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11158542	1.00[CEU][hapmap];0.97[GIH][hapmap];0.97[TSI][hapmap];0.93[EUR][1000 genomes]
rs11158543	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11623457	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11625265	1.00[CEU][hapmap];1.00[GIH][hapmap];0.81[MEX][hapmap];0.94[TSI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11626222	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11627387	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11628221	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11845653	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11848179	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11849935	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11851236	0.88[EUR][1000 genomes]
rs12050238	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12050358	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12385918	0.85[GIH][hapmap]
rs1453004	0.85[GIH][hapmap]
rs1453007	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1453009	0.85[GIH][hapmap]
rs1470851	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1966865	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1980519	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1980520	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1982440	0.87[GIH][hapmap]
rs2045024	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2123459	1.00[CEU][hapmap];0.95[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2123460	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];1.00[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2198347	1.00[CEU][hapmap];1.00[GIH][hapmap];0.87[MEX][hapmap];0.97[TSI][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2281603	0.81[GIH][hapmap]
rs28469649	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs28666045	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28730549	0.92[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.88[EUR][1000 genomes]
rs28738919	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28766386	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[CHD][hapmap];0.97[GIH][hapmap];0.81[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs28827477	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35115595	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3742606	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.97[GIH][hapmap];0.80[JPT][hapmap];0.81[MEX][hapmap];0.97[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3742608	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3783725	0.82[EUR][1000 genomes]
rs3783727	0.87[EUR][1000 genomes]
rs4632045	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57525201	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs59577187	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61985663	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61985668	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs61985706	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7160131	0.82[CEU][hapmap];0.81[GIH][hapmap]
rs7160634	0.90[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.82[EUR][1000 genomes]
rs73265639	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73265640	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73265641	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs745686	0.87[GIH][hapmap];0.87[TSI][hapmap];0.83[EUR][1000 genomes]
rs8016556	0.82[EUR][1000 genomes]
rs8022537	0.82[EUR][1000 genomes]
rs8022545	0.82[EUR][1000 genomes]
rs926803	0.87[GIH][hapmap];0.81[MEX][hapmap];0.86[TSI][hapmap];0.87[EUR][1000 genomes]
rs9323450	1.00[CEU][hapmap];0.82[TSI][hapmap]
rs9323451	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9323452	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]

mRNA abundance (count:10)

SNP	Gene	Cis/trans	Tissue	Source
rs6573559	ZBTB25	cis	lymphoblastoid	seeQTL
rs6573559	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs6573559	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs6573559	ZBTB25	cis	Nerve Tibial	GTEx
rs6573559	ZBTB25	cis	lung	GTEx
rs6573559	ZBTB25	cis	Thyroid	GTEx
rs6573559	ZBTB25	cis	parietal	SCAN
rs6573559	ZBTB25	cis	multi-tissue	Pritchard
rs6573559	ZBTB25	cis	cerebellum	SCAN
rs6573559	ZBTB1	cis	cerebellum	SCAN

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64856200-64931200	Weak transcription	Stomach Mucosa	stomach
2	chr14:64861800-64931600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:64867200-64927000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
4	chr14:64867200-64929600	Strong transcription	Dnd41	blood
5	chr14:64874000-64928400	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr14:64877000-64927000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr14:64877000-64929400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:64877400-64928200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:64877800-64929200	Strong transcription	H1 Cell Line	embryonic stem cell
10	chr14:64881600-64929000	Strong transcription	Fetal Thymus	thymus
11	chr14:64891200-64928600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:64900400-64931800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr14:64905800-64931400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr14:64910600-64931200	Weak transcription	Fetal Heart	heart
15	chr14:64911200-64931400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr14:64911800-64931400	Weak transcription	Colon Smooth Muscle	Colon
17	chr14:64912200-64929600	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:64912400-64923600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr14:64912400-64925000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:64912400-64930200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:64912600-64923400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr14:64912600-64926800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr14:64912600-64929600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr14:64913200-64923200	Strong transcription	Fetal Intestine Small	intestine
25	chr14:64913400-64929600	Strong transcription	Fetal Stomach	stomach
26	chr14:64913600-64929000	Strong transcription	H9 Cell Line	embryonic stem cell
27	chr14:64913600-64929200	Strong transcription	Fetal Muscle Trunk	muscle
28	chr14:64913800-64931200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
29	chr14:64914200-64924000	Strong transcription	Skeletal Muscle Female	skeletal muscle
30	chr14:64914200-64924200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr14:64914200-64927200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr14:64914200-64927400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr14:64914400-64923400	Strong transcription	Osteobl	bone
34	chr14:64914400-64924600	Strong transcription	Adipose Nuclei	Adipose
35	chr14:64914400-64925000	Strong transcription	Monocytes-CD14+_RO01746	blood
36	chr14:64914400-64926400	Strong transcription	A549	lung
37	chr14:64914400-64927000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr14:64914400-64927000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:64914600-64923400	Strong transcription	Left Ventricle	heart
40	chr14:64914800-64923200	Strong transcription	Thymus	Thymus
41	chr14:64914800-64924200	Strong transcription	Duodenum Mucosa	Duodenum
42	chr14:64914800-64926400	Strong transcription	Fetal Brain Female	brain
43	chr14:64914800-64926800	Strong transcription	Primary hematopoietic stem cells	blood
44	chr14:64915000-64925200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr14:64915000-64931000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr14:64915200-64924400	Strong transcription	Primary T cells from cord blood	blood
47	chr14:64915200-64927000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:64915400-64929800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr14:64915400-64931200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
50	chr14:64915600-64925000	Strong transcription	Cortex derived primary cultured neurospheres	brain

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