Variant report

Variant	rs10133411
Chromosome Location	chr14:64988924-64988925
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64988143..64990019-chr14:65005055..65006993,2	MCF-7	breast:
2	chr14:64972191..64974986-chr14:64988003..64989901,3	MCF-7	breast:
3	chr14:64981930..64983904-chr14:64987033..64989897,3	MCF-7	breast:
4	chr14:64987035..64989680-chr14:64995490..64997427,2	MCF-7	breast:

Extended variants
information (count: 85 )
Associated
traits (count: 8 )

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10131155	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10132424	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10132794	0.87[CEU][hapmap]
rs10133243	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10133696	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs10134530	0.84[ASW][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10134770	0.91[MKK][hapmap]
rs10136732	0.84[GIH][hapmap];0.90[MKK][hapmap];1.00[YRI][hapmap]
rs10138256	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142835	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142879	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs10143170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10144661	0.84[CEU][hapmap];0.85[YRI][hapmap];0.81[EUR][1000 genomes]
rs10145013	0.84[ASW][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs10149286	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10150987	0.81[EUR][1000 genomes]
rs10151656	0.91[MKK][hapmap]
rs10873173	0.90[ASN][1000 genomes]
rs11158542	0.82[GIH][hapmap]
rs11158543	0.83[ASN][1000 genomes]
rs11158544	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11623457	0.88[ASN][1000 genomes]
rs11625265	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11627387	0.84[GIH][hapmap]
rs11628221	0.90[ASN][1000 genomes]
rs11847054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11848179	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11849530	1.00[CEU][hapmap]
rs11850291	0.84[CEU][hapmap];0.91[MKK][hapmap]
rs11851236	0.93[CHB][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs12050238	0.93[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[ASN][1000 genomes]
rs12050358	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs12385910	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12385918	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12586212	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12588509	0.84[CEU][hapmap];0.91[MKK][hapmap]
rs12588886	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12589947	0.85[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1453004	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1453007	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs1453009	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1470851	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.80[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs17101896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1966865	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs1980519	0.90[ASN][1000 genomes]
rs1980520	0.84[ASW][hapmap];0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs1982440	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2045024	0.82[GIH][hapmap]
rs2123459	0.84[ASW][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];0.85[YRI][hapmap]
rs2123460	0.84[ASW][hapmap];0.84[GIH][hapmap];0.83[MKK][hapmap];1.00[YRI][hapmap]
rs2198347	0.93[CHB][hapmap];0.88[CHD][hapmap];0.84[GIH][hapmap];1.00[JPT][hapmap];0.80[MEX][hapmap];0.91[MKK][hapmap];1.00[YRI][hapmap];0.90[ASN][1000 genomes]
rs2281603	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[MKK][hapmap];0.93[TSI][hapmap];1.00[YRI][hapmap]
rs28446048	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28469649	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28626711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28666045	0.87[ASN][1000 genomes]
rs28730549	0.93[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs28738919	0.88[ASN][1000 genomes]
rs28766386	0.82[GIH][hapmap]
rs35451957	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3742606	0.82[GIH][hapmap]
rs3783722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3783723	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3783726	0.94[CEU][hapmap]
rs4632045	0.90[ASN][1000 genomes]
rs58893738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59213791	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs59440409	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59512674	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60908674	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61615397	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61985668	0.88[ASN][1000 genomes]
rs61985706	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs61985707	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985711	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61987034	0.81[EUR][1000 genomes]
rs61987035	0.81[EUR][1000 genomes]
rs6573559	0.84[GIH][hapmap]
rs7160634	0.93[CHB][hapmap];0.83[CHD][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs73267743	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73267744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs926803	0.93[CHB][hapmap];0.82[CHD][hapmap];0.83[JPT][hapmap];0.83[ASN][1000 genomes]
rs9323452	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:8)

SNP	Gene	Cis/trans	Tissue	Source
rs10133411	ZBTB25	cis	multi-tissue	Pritchard
rs10133411	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs10133411	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs10133411	ZBTB1	cis	cerebellum	SCAN
rs10133411	ZBTB25	cis	cerebellum	SCAN
rs10133411	ZBTB25	cis	Nerve Tibial	GTEx
rs10133411	ZBTB1	cis	lymphoblastoid	seeQTL
rs10133411	ZBTB25	cis	lymphoblastoid	seeQTL

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
3	chr14:64974800-65006000	Weak transcription	Ovary	ovary
4	chr14:64976000-64995400	Weak transcription	Gastric	stomach
5	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
6	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
7	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
8	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
10	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:64978200-64989400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:64978400-64992200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr14:64978400-64992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr14:64978600-64996200	Weak transcription	Brain Angular Gyrus	brain
16	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
17	chr14:64981800-64989000	Weak transcription	Brain Substantia Nigra	brain
18	chr14:64982000-64989400	Weak transcription	Aorta	Aorta
19	chr14:64982000-65005800	Weak transcription	Fetal Heart	heart
20	chr14:64983400-64993000	Weak transcription	Psoas Muscle	Psoas
21	chr14:64984200-64989000	Weak transcription	Colon Smooth Muscle	Colon
22	chr14:64984800-64996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:64985000-64991000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr14:64985400-64990000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr14:64987000-64990400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr14:64987000-64993800	Strong transcription	Dnd41	blood
27	chr14:64987400-64993600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr14:64987600-64990200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr14:64987600-64990400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:64987600-64990400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr14:64987600-64990400	Strong transcription	Thymus	Thymus
32	chr14:64987600-64990400	Strong transcription	GM12878-XiMat	blood
33	chr14:64987600-64990400	Strong transcription	NHEK	skin
34	chr14:64987600-64990600	Strong transcription	Rectal Mucosa Donor 31	rectum
35	chr14:64987600-64993800	Strong transcription	Fetal Thymus	thymus
36	chr14:64987800-64990400	Strong transcription	HUES64 Cell Line	embryonic stem cell
37	chr14:64987800-64990400	Strong transcription	Fetal Muscle Trunk	muscle
38	chr14:64987800-64993600	Strong transcription	Osteobl	bone
39	chr14:64987800-64993800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
40	chr14:64987800-65005000	Weak transcription	Pancreas	Pancrea
41	chr14:64988000-64989000	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr14:64988000-64990600	Strong transcription	Hela-S3	cervix
43	chr14:64988000-64992600	Weak transcription	Fetal Intestine Small	intestine
44	chr14:64988200-64989800	Strong transcription	Placenta	Placenta
45	chr14:64988200-64990000	Strong transcription	Brain Hippocampus Middle	brain
46	chr14:64988200-64990200	Strong transcription	H1 Cell Line	embryonic stem cell
47	chr14:64988200-64990200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr14:64988200-64990200	Strong transcription	Duodenum Mucosa	Duodenum
49	chr14:64988200-64990200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr14:64988200-64990200	Strong transcription	Fetal Muscle Leg	muscle

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