Variant report

Variant	rs11628221
Chromosome Location	chr14:64967495-64967496
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64956946..64960251-chr14:64966577..64968404,3	MCF-7	breast:
2	chr14:64816410..64817951-chr14:64966765..64968598,2	MCF-7	breast:
3	chr14:64950027..64951532-chr14:64966808..64969556,2	MCF-7	breast:
4	chr14:64967118..64970041-chr14:65086433..65088107,2	MCF-7	breast:
5	chr14:64799661..64807761-chr14:64967157..64973754,20	MCF-7	breast:
6	chr14:64803146..64808978-chr14:64966714..64972227,18	MCF-7	breast:

Variant related genes	Relation type
ENSG00000140009	Chromatin interaction
ENSG00000214770	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 95 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:95)

rs_ID	r²[population]
rs10131155	0.92[ASN][1000 genomes]
rs10131416	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10132424	0.88[ASN][1000 genomes]
rs10132969	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10133243	0.91[ASN][1000 genomes]
rs10133411	0.90[ASN][1000 genomes]
rs10133696	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10133848	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10134530	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10136732	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10138256	0.90[ASN][1000 genomes]
rs10142835	0.90[ASN][1000 genomes]
rs10142879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10143170	0.90[ASN][1000 genomes]
rs10143839	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10145001	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10145005	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10145013	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10147522	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10149286	0.90[ASN][1000 genomes]
rs10150781	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10873173	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158542	0.89[EUR][1000 genomes]
rs11158543	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11158544	0.90[ASN][1000 genomes]
rs11623457	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11625265	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11626222	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11627387	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11845653	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11847054	0.90[ASN][1000 genomes]
rs11848179	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11849935	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11851236	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12050238	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050358	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12385910	0.89[ASN][1000 genomes]
rs12385918	0.90[ASN][1000 genomes]
rs12586212	0.92[ASN][1000 genomes]
rs12588886	0.90[ASN][1000 genomes]
rs12589947	0.91[ASN][1000 genomes]
rs1453004	0.90[ASN][1000 genomes]
rs1453007	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1453009	0.90[ASN][1000 genomes]
rs1470851	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17101896	0.90[ASN][1000 genomes]
rs1966865	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980519	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1980520	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1982440	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2045024	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2123459	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2123460	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2198347	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28446048	0.92[ASN][1000 genomes]
rs28469649	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28626711	0.90[ASN][1000 genomes]
rs28666045	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28730549	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28738919	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs28766386	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28827477	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35115595	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35451957	0.90[ASN][1000 genomes]
rs3742606	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3742608	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3783722	0.90[ASN][1000 genomes]
rs3783723	0.92[ASN][1000 genomes]
rs3783724	0.92[ASN][1000 genomes]
rs3783727	0.83[EUR][1000 genomes]
rs4632045	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57525201	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs58893738	0.90[ASN][1000 genomes]
rs59213791	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs59440409	0.91[ASN][1000 genomes]
rs59512674	0.90[ASN][1000 genomes]
rs59577187	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs60908674	0.91[ASN][1000 genomes]
rs61615397	0.91[ASN][1000 genomes]
rs61985663	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs61985668	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61985706	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985707	0.92[ASN][1000 genomes]
rs61985711	0.90[ASN][1000 genomes]
rs6573559	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7160634	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73265639	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265640	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73265641	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73267743	0.92[ASN][1000 genomes]
rs73267744	0.92[ASN][1000 genomes]
rs745686	0.84[EUR][1000 genomes]
rs926803	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9323451	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9323452	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs11628221	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs11628221	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL
rs11628221	ZBTB25	cis	lung	GTEx
rs11628221	ZBTB25	cis	Nerve Tibial	GTEx

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
6	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
11	chr14:64954600-64968400	Weak transcription	Gastric	stomach
12	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
13	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
15	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
19	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
22	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
23	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
24	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
26	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
27	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
28	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
29	chr14:64955600-64968200	Weak transcription	Placenta	Placenta
30	chr14:64955600-64968200	Weak transcription	NHLF	lung
31	chr14:64955800-64968200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr14:64955800-64968400	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr14:64956000-64967800	Weak transcription	Brain Germinal Matrix	brain
34	chr14:64956000-64968400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr14:64956200-64968000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr14:64956200-64968200	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr14:64956200-64968200	Weak transcription	Fetal Brain Female	brain
38	chr14:64956200-64968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:64956400-64968200	Weak transcription	HSMM	muscle
40	chr14:64956600-64968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:64956800-64968800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr14:64957200-64967800	Weak transcription	Liver	Liver
43	chr14:64957600-64968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
44	chr14:64958000-64968200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
45	chr14:64958400-64967800	Weak transcription	Stomach Smooth Muscle	stomach
46	chr14:64958600-64968000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr14:64958600-64968000	Weak transcription	Adipose Nuclei	Adipose
48	chr14:64958600-64968400	Weak transcription	Left Ventricle	heart
49	chr14:64958600-64968400	Weak transcription	Lung	lung
50	chr14:64958800-64968000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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