Variant report

Variant	rs57525201
Chromosome Location	chr14:64955692-64955693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64955531..64957276-chr14:64970390..64972716,2	K562	blood:
2	chr14:64954248..64956341-chr14:64968614..64970888,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 63 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10131416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10132969	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10133696	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10133848	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10134530	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10136732	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10142879	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs10143839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10145001	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10145005	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10145013	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10147522	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10150781	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10873173	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11158542	0.90[EUR][1000 genomes]
rs11158543	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11623457	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11625265	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11626222	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11627387	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11628221	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11845653	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11848179	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11849935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11851236	0.91[EUR][1000 genomes]
rs12050238	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12050358	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1453007	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1470851	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1966865	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1980519	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1980520	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1982440	0.83[AFR][1000 genomes]
rs2045024	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2123459	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2123460	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2198347	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28469649	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28666045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28730549	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28738919	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28766386	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28827477	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35115595	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3742606	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3742608	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3783727	0.84[EUR][1000 genomes]
rs4632045	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59213791	0.83[AFR][1000 genomes]
rs59577187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61985663	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61985668	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61985706	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6573559	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7160634	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73265639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73265640	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73265641	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs745686	0.85[EUR][1000 genomes]
rs926803	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9323451	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9323452	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902022	chr14:64926581-64958638	Weak transcription Genic enhancers Active TSS Flanking Active TSS Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs57525201	ZBTB25	cis	Nerve Tibial	GTEx
rs57525201	ZBTB25	cis	multi-tissue	Pritchard
rs57525201	ZBTB25	cis	lung	GTEx
rs57525201	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL
rs57525201	ZBTB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64945000-64958200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr14:64945400-64957400	Weak transcription	Fetal Heart	heart
6	chr14:64949000-64958400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr14:64949600-64958800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
9	chr14:64950400-64957200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr14:64950400-64958800	Strong transcription	Dnd41	blood
11	chr14:64950400-64963000	Strong transcription	Fetal Thymus	thymus
12	chr14:64950600-64956200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
14	chr14:64950800-64956200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr14:64950800-64958400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr14:64951000-64956000	Strong transcription	Primary B cells from peripheral blood	blood
17	chr14:64951000-64956200	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr14:64951000-64958600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:64951000-64958600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:64951200-64957200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:64951200-64957800	Strong transcription	Primary T cells fromperipheralblood	blood
22	chr14:64951600-64956600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr14:64951600-64956800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr14:64951600-64958600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:64951600-64958600	Strong transcription	Monocytes-CD14+_RO01746	blood
26	chr14:64951800-64958000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:64951800-64958400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr14:64951800-64958800	Strong transcription	Fetal Muscle Trunk	muscle
29	chr14:64952000-64957600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr14:64952600-64958600	Strong transcription	HUES48 Cell Line	embryonic stem cell
32	chr14:64953000-64956200	Strong transcription	Hela-S3	cervix
33	chr14:64953000-64960200	Weak transcription	K562	blood
34	chr14:64953200-64958000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr14:64953200-64958400	Strong transcription	HUES64 Cell Line	embryonic stem cell
36	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr14:64953400-64956000	Strong transcription	Stomach Smooth Muscle	stomach
38	chr14:64953400-64956200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
39	chr14:64953400-64956200	Strong transcription	Cortex derived primary cultured neurospheres	brain
40	chr14:64953400-64956400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
41	chr14:64953600-64955800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr14:64953600-64955800	Strong transcription	Brain Cingulate Gyrus	brain
43	chr14:64953600-64955800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr14:64953600-64956000	Strong transcription	Fetal Lung	lung
45	chr14:64953600-64956000	Strong transcription	Left Ventricle	heart
46	chr14:64953600-64956000	Strong transcription	Thymus	Thymus
47	chr14:64953600-64956400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr14:64953600-64956400	Strong transcription	HSMM	muscle
49	chr14:64953600-64956400	Strong transcription	NHEK	skin
50	chr14:64953600-64956600	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--

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