Variant report

Variant	rs61987034
Chromosome Location	chr14:65034123-65034124
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005508..65008308-chr14:65032018..65035005,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130241	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10130755	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10132033	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10132794	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10133411	0.81[EUR][1000 genomes]
rs10134770	0.81[EUR][1000 genomes]
rs10138256	0.81[EUR][1000 genomes]
rs10142343	0.87[ASN][1000 genomes]
rs10142536	0.92[ASN][1000 genomes]
rs10142835	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs10143170	0.81[EUR][1000 genomes]
rs10144661	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10145844	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10149286	0.81[EUR][1000 genomes]
rs10150987	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10151434	0.87[ASN][1000 genomes]
rs10151656	0.80[ASN][1000 genomes]
rs10151970	0.87[ASN][1000 genomes]
rs11158544	0.81[EUR][1000 genomes]
rs11847054	0.81[EUR][1000 genomes]
rs11850291	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12385918	0.81[EUR][1000 genomes]
rs12588437	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12588509	0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1453009	0.81[EUR][1000 genomes]
rs17101896	0.81[EUR][1000 genomes]
rs28626711	0.81[EUR][1000 genomes]
rs35451957	0.81[EUR][1000 genomes]
rs3783722	0.81[EUR][1000 genomes]
rs58893738	0.81[EUR][1000 genomes]
rs59512674	0.81[EUR][1000 genomes]
rs61985711	0.81[EUR][1000 genomes]
rs61987035	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61987036	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7149587	0.87[ASN][1000 genomes]
rs7160131	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs61987034	ZBTB25	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
2	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr14:65029200-65035800	Weak transcription	Placenta	Placenta
4	chr14:65029400-65035600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr14:65030600-65039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr14:65030800-65034600	Enhancers	Brain Hippocampus Middle	brain
8	chr14:65031000-65035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr14:65031000-65035800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
10	chr14:65031000-65039000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr14:65033200-65034200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:65033200-65034200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr14:65033200-65034200	Enhancers	Brain Anterior Caudate	brain
14	chr14:65033200-65034200	Enhancers	Fetal Muscle Leg	muscle
15	chr14:65033200-65034200	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:65033200-65034200	Enhancers	NHDF-Ad	bronchial
17	chr14:65033200-65034600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr14:65033200-65036400	Enhancers	Colon Smooth Muscle	Colon
19	chr14:65033200-65037000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr14:65033400-65034200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr14:65033400-65034400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:65033400-65034400	Enhancers	A549	lung
23	chr14:65033400-65040000	Weak transcription	Gastric	stomach
24	chr14:65033600-65034200	Enhancers	Brain Substantia Nigra	brain
25	chr14:65033600-65035800	Weak transcription	Fetal Muscle Trunk	muscle
26	chr14:65033600-65036800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr14:65033600-65039200	Weak transcription	Aorta	Aorta
28	chr14:65033600-65039400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr14:65033800-65034400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:65033800-65035000	Weak transcription	Hela-S3	cervix
31	chr14:65033800-65035200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr14:65033800-65035200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:65033800-65035200	Weak transcription	Stomach Smooth Muscle	stomach
34	chr14:65033800-65035400	Weak transcription	Skeletal Muscle Female	skeletal muscle
35	chr14:65033800-65035600	Weak transcription	Adipose Nuclei	Adipose
36	chr14:65033800-65035800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
37	chr14:65033800-65035800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr14:65033800-65035800	Weak transcription	Brain Germinal Matrix	brain
39	chr14:65033800-65036400	Enhancers	HUVEC	blood vessel
40	chr14:65033800-65036600	Weak transcription	Psoas Muscle	Psoas
41	chr14:65033800-65039400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr14:65033800-65039400	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:65033800-65039400	Weak transcription	Brain Angular Gyrus	brain
44	chr14:65033800-65040000	Weak transcription	Esophagus	oesophagus
45	chr14:65034000-65034200	Enhancers	Brain Cingulate Gyrus	brain
46	chr14:65034000-65035000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr14:65034000-65035000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr14:65034000-65035200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr14:65034000-65035200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr14:65034000-65035200	Weak transcription	Skeletal Muscle Male	skeletal muscle

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