Variant report

Variant	rs12588277
Chromosome Location	chr14:78763870-78763871
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1523132	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.95[JPT][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903744	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs8006086	0.84[CHD][hapmap]
rs8013312	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12588277	C14orf118	cis	parietal	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78731000-78764200	Weak transcription	Brain Cingulate Gyrus	brain
2	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
4	chr14:78749400-78764000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr14:78750200-78778400	Weak transcription	Brain Anterior Caudate	brain
6	chr14:78753000-78764200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr14:78757600-78764200	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr14:78758600-78764200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:78758800-78764200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr14:78758800-78764400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr14:78758800-78768800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr14:78759200-78764200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr14:78759200-78764400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr14:78759800-78764000	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:78761800-78764200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr14:78763200-78765000	Enhancers	Brain Germinal Matrix	brain
17	chr14:78763800-78765200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr14:78763800-78765400	Enhancers	Fetal Brain Male	brain
19	chr14:78763800-78766400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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