Variant report

Variant	rs8013312
Chromosome Location	chr14:78769152-78769153
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12588277	0.94[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1523132	0.88[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4903744	0.95[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78738600-78778200	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr14:78738600-78779000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:78750200-78778400	Weak transcription	Brain Anterior Caudate	brain
4	chr14:78765400-78771200	Weak transcription	Fetal Brain Male	brain
5	chr14:78767600-78769400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr14:78768200-78769200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr14:78768400-78769600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:78768800-78769400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr14:78768800-78769400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr14:78768800-78769600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr14:78768800-78769600	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr14:78769000-78769200	Enhancers	Pancreatic Islets	Pancreatic Islet
13	chr14:78769000-78769400	Enhancers	H1 Cell Line	embryonic stem cell
14	chr14:78769000-78769400	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr14:78769000-78769600	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr14:78769000-78769600	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:78769000-78774000	Enhancers	Brain Germinal Matrix	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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