Variant report

Variant	rs12589362
Chromosome Location	chr14:42020163-42020164
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10143349	0.83[ASN][1000 genomes]
rs10143445	0.83[ASN][1000 genomes]
rs1103438	0.86[ASN][1000 genomes]
rs1111179	0.85[JPT][hapmap]
rs11157242	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes]
rs1117723	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes]
rs11628212	0.86[ASN][1000 genomes]
rs12100476	0.88[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12100840	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs12100891	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12433487	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12436637	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12589112	0.90[AMR][1000 genomes]
rs12589365	0.85[ASN][1000 genomes]
rs12590078	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17112092	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17112133	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs17112137	0.81[AMR][1000 genomes]
rs1950835	0.90[JPT][hapmap]
rs1953700	0.81[ASN][1000 genomes]
rs1956446	0.88[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs1956447	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1998126	0.81[AMR][1000 genomes]
rs2415682	0.86[ASN][1000 genomes]
rs2899928	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes]
rs4479135	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58114965	0.87[ASN][1000 genomes]
rs58845274	0.81[AMR][1000 genomes]
rs59589366	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61990270	0.90[ASN][1000 genomes]
rs61990277	0.87[ASN][1000 genomes]
rs6572097	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs73309890	0.88[ASN][1000 genomes]
rs862478	0.86[ASN][1000 genomes]
rs862479	0.89[ASN][1000 genomes]
rs862480	0.86[ASN][1000 genomes]
rs862481	0.86[ASN][1000 genomes]
rs862482	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456224	chr14:41432350-42059281	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564471	chr14:41432350-42059281	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042078	chr14:41993985-42120143	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42018000-42020400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr14:42018600-42020200	Enhancers	Placenta Amnion	Placenta Amnion
3	chr14:42019400-42020200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:42019400-42020200	Enhancers	Fetal Stomach	stomach
5	chr14:42019600-42020200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:42019800-42021000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr14:42020000-42020400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links