Variant report

Variant	rs73309890
Chromosome Location	chr14:42017766-42017767
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10138559	0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10143349	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10143445	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1103437	0.88[EUR][1000 genomes]
rs1103438	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1111037	0.91[EUR][1000 genomes]
rs11628212	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12100476	0.87[ASN][1000 genomes]
rs12437380	0.88[EUR][1000 genomes]
rs12589362	0.88[ASN][1000 genomes]
rs12589365	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12590078	0.82[ASN][1000 genomes]
rs17112092	0.88[ASN][1000 genomes]
rs1953700	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1953701	0.83[EUR][1000 genomes]
rs1956445	0.92[EUR][1000 genomes]
rs1956446	0.88[ASN][1000 genomes]
rs1956447	0.83[ASN][1000 genomes]
rs1959411	0.83[EUR][1000 genomes]
rs1959412	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1959413	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2415678	0.83[EUR][1000 genomes]
rs2415682	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35583725	0.91[EUR][1000 genomes]
rs3985189	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs3985190	0.85[EUR][1000 genomes]
rs4479135	0.81[ASN][1000 genomes]
rs55897228	0.91[EUR][1000 genomes]
rs58114965	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59589366	0.81[ASN][1000 genomes]
rs61990270	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61990271	0.86[EUR][1000 genomes]
rs61990273	0.92[EUR][1000 genomes]
rs61990274	0.92[EUR][1000 genomes]
rs61990275	0.92[EUR][1000 genomes]
rs61990277	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs862475	0.85[EUR][1000 genomes]
rs862476	0.85[EUR][1000 genomes]
rs862478	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs862479	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs862480	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs862481	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs862482	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9806026	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456224	chr14:41432350-42059281	Flanking Active TSS Bivalent Enhancer Enhancers Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv564471	chr14:41432350-42059281	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1831164	chr14:41673017-42103168	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv533968	chr14:41882101-42327882	Active TSS Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1042078	chr14:41993985-42120143	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42016600-42019000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:42016800-42019000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr14:42017200-42018600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr14:42017400-42018600	Weak transcription	Placenta Amnion	Placenta Amnion

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