Variant report

Variant	rs12590557
Chromosome Location	chr14:81621664-81621665
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10130445	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11846779	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1885602	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2371562	0.84[EUR][1000 genomes]
rs7150551	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81610800-81630800	Weak transcription	Left Ventricle	heart
2	chr14:81614200-81629400	Weak transcription	Dnd41	blood
3	chr14:81615800-81627400	Weak transcription	Liver	Liver
4	chr14:81619400-81623400	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr14:81619400-81623600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr14:81619600-81623000	Weak transcription	Primary neutrophils fromperipheralblood	blood
7	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
8	chr14:81621600-81622000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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