Variant report

Variant	rs1885602
Chromosome Location	chr14:81629996-81629997
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:81628261..81630205-chr14:81631468..81633058,2	MCF-7	breast:
2	chr14:81596731..81598312-chr14:81628484..81630801,2	K562	blood:
3	chr14:81627657..81630242-chr14:81684338..81686999,2	MCF-7	breast:
4	chr14:81627082..81632359-chr14:81683288..81688992,11	K562	blood:
5	chr14:81462289..81463361-chr14:81629649..81631060,10	MCF-7	breast:
6	chr14:81462542..81463148-chr14:81629279..81630008,2	K562	blood:
7	chr14:81629127..81632220-chr14:81685534..81688324,5	MCF-7	breast:
8	chr14:81629277..81631931-chr14:81634714..81637137,3	K562	blood:
9	chr14:81628909..81631535-chr14:81690174..81692139,2	MCF-7	breast:
10	chr14:81629067..81632213-chr14:81683312..81688169,7	K562	blood:
11	chr14:81628202..81631737-chr14:81637177..81639888,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000258999	Chromatin interaction
ENSG00000165417	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10130445	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10139515	0.82[AFR][1000 genomes]
rs10145622	0.91[YRI][hapmap]
rs11846779	0.82[AMR][1000 genomes]
rs12590557	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2371562	1.00[CEU][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.82[GIH][hapmap];1.00[JPT][hapmap];0.97[TSI][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7150551	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832841	chr14:81588322-81743921	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81610800-81630800	Weak transcription	Left Ventricle	heart
2	chr14:81619600-81636000	Weak transcription	Psoas Muscle	Psoas
3	chr14:81627400-81632400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:81628000-81630400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:81628000-81630800	Weak transcription	HepG2	liver
6	chr14:81628600-81631800	Enhancers	K562	blood
7	chr14:81628800-81630000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr14:81628800-81631000	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr14:81629200-81630000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
10	chr14:81629200-81630000	Enhancers	Osteobl	bone
11	chr14:81629200-81631000	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr14:81629200-81635600	Weak transcription	Primary B cells from cord blood	blood
13	chr14:81629200-81636200	Weak transcription	Aorta	Aorta
14	chr14:81629400-81630000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr14:81629400-81630000	Enhancers	Liver	Liver
16	chr14:81629400-81630600	Enhancers	Dnd41	blood
17	chr14:81629600-81630000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:81629600-81630200	Weak transcription	Pancreas	Pancrea
19	chr14:81629600-81630600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr14:81629600-81631000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr14:81629800-81630000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
22	chr14:81629800-81630200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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