Variant report

Variant	rs12591335
Chromosome Location	chr15:77774894-77774895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-HMG20A-6	chr15:77774392-77777949	NONHSAT047442

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11072649	0.83[CHB][hapmap]
rs12594346	0.94[ASN][1000 genomes]
rs12594505	0.88[ASN][1000 genomes]
rs16968809	0.94[ASN][1000 genomes]
rs4886873	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs6495240	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77750400-77777800	Strong transcription	Primary B cells from peripheral blood	blood
2	chr15:77750600-77777800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr15:77750600-77779200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:77750600-77779600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:77750800-77780400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr15:77753400-77777600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr15:77755200-77775600	Strong transcription	Duodenum Mucosa	Duodenum
8	chr15:77755400-77777800	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr15:77756200-77778400	Strong transcription	Fetal Thymus	thymus
10	chr15:77756800-77775800	Weak transcription	Pancreas	Pancrea
11	chr15:77759200-77776000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr15:77761600-77775800	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr15:77762000-77775800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr15:77764600-77775400	Weak transcription	Brain Germinal Matrix	brain
15	chr15:77765200-77775400	Weak transcription	Right Ventricle	heart
16	chr15:77767200-77777400	Strong transcription	GM12878-XiMat	blood
17	chr15:77767600-77777600	Strong transcription	Primary T helper cells fromperipheralblood	blood
18	chr15:77769400-77777600	Strong transcription	Primary T helper cells PMA-I stimulated	--
19	chr15:77769400-77777600	Strong transcription	Rectal Mucosa Donor 29	rectum
20	chr15:77769400-77777800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr15:77769400-77777800	Strong transcription	HepG2	liver
22	chr15:77769400-77778000	Strong transcription	Dnd41	blood
23	chr15:77769400-77779800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr15:77769600-77777600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr15:77769600-77777600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:77769600-77778000	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr15:77769600-77778600	Strong transcription	Liver	Liver
28	chr15:77769800-77777600	Strong transcription	Primary hematopoietic stem cells	blood
29	chr15:77769800-77777800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
30	chr15:77769800-77777800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:77769800-77778000	Strong transcription	Primary T cells from cord blood	blood
32	chr15:77770000-77777600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
33	chr15:77770000-77789200	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr15:77770400-77777600	Strong transcription	Thymus	Thymus
35	chr15:77770800-77775000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr15:77770800-77775400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:77771000-77775400	Weak transcription	Esophagus	oesophagus
38	chr15:77771000-77775400	Weak transcription	Gastric	stomach
39	chr15:77771000-77775400	Weak transcription	Lung	lung
40	chr15:77771000-77775400	Weak transcription	Right Atrium	heart
41	chr15:77771000-77775400	Weak transcription	Spleen	Spleen
42	chr15:77771000-77775600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr15:77771000-77775800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr15:77771000-77775800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr15:77771000-77775800	Weak transcription	Aorta	Aorta
46	chr15:77771200-77775000	Weak transcription	Brain Cingulate Gyrus	brain
47	chr15:77771800-77775200	Weak transcription	Brain Anterior Caudate	brain
48	chr15:77772000-77775200	Weak transcription	A549	lung
49	chr15:77772000-77775400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
50	chr15:77772000-77775400	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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