Variant report

Variant	rs4886873
Chromosome Location	chr15:77829176-77829177
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:77800050..77802176-chr15:77827673..77829514,2	MCF-7	breast:
2	chr15:77828874..77831053-chr15:77833422..77835199,2	MCF-7	breast:
3	chr15:77827126..77831240-chr15:77834209..77836612,4	K562	blood:
4	chr1:1179419..1181281-chr15:77828789..77830310,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000184163	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11854328	0.85[CEU][hapmap]
rs11857860	0.83[CEU][hapmap]
rs12591335	0.90[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12900004	0.84[CEU][hapmap]
rs12901130	0.89[CEU][hapmap]
rs12907746	0.85[CEU][hapmap]
rs4886875	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs4886876	0.85[CEU][hapmap]
rs4886877	0.84[CEU][hapmap];0.81[CHB][hapmap]
rs7162637	0.85[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1043284	chr15:77740632-77884026	Weak transcription Strong transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv570139	chr15:77762493-77865459	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
5	nsv570140	chr15:77787469-77851535	Flanking Active TSS Weak transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv833060	chr15:77816654-78035204	Weak transcription Bivalent Enhancer Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77819800-77831000	Weak transcription	Gastric	stomach
2	chr15:77821000-77831200	Weak transcription	Esophagus	oesophagus
3	chr15:77821600-77830200	Weak transcription	Left Ventricle	heart
4	chr15:77822000-77833600	Weak transcription	Right Atrium	heart
5	chr15:77824800-77829400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:77825800-77830200	Weak transcription	Right Ventricle	heart
7	chr15:77825800-77831000	Weak transcription	Stomach Mucosa	stomach
8	chr15:77826400-77829800	Weak transcription	Fetal Brain Male	brain
9	chr15:77826600-77829200	Weak transcription	Fetal Brain Female	brain
10	chr15:77827000-77829600	Weak transcription	HUES48 Cell Line	embryonic stem cell
11	chr15:77827000-77829800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:77827000-77833200	Weak transcription	HSMMtube	muscle
13	chr15:77827000-77835400	Weak transcription	Psoas Muscle	Psoas
14	chr15:77827000-77845400	Weak transcription	Fetal Kidney	kidney
15	chr15:77827200-77830200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr15:77827400-77829400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr15:77827600-77832400	Enhancers	Pancreas	Pancrea
18	chr15:77827600-77834000	Enhancers	Primary B cells from peripheral blood	blood
19	chr15:77827800-77830000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr15:77827800-77831200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr15:77828200-77829800	Enhancers	Fetal Intestine Small	intestine
22	chr15:77828400-77829800	Enhancers	GM12878-XiMat	blood
23	chr15:77828400-77831400	Enhancers	ES-I3 Cell Line	embryonic stem cell
24	chr15:77828400-77831800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr15:77828400-77831800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr15:77828400-77832000	Enhancers	Brain Hippocampus Middle	brain
27	chr15:77828400-77832400	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr15:77828400-77833400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr15:77828400-77835400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr15:77828400-77835400	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr15:77828400-77835400	Enhancers	Brain Anterior Caudate	brain
32	chr15:77828600-77829200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
33	chr15:77828600-77829200	Enhancers	Fetal Stomach	stomach
34	chr15:77828600-77829400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr15:77828600-77830200	Enhancers	Brain Inferior Temporal Lobe	brain
36	chr15:77828600-77831200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr15:77828600-77831400	Enhancers	iPS-20b Cell Line	embryonic stem cell
38	chr15:77828600-77831600	Enhancers	H9 Cell Line	embryonic stem cell
39	chr15:77828600-77831600	Enhancers	Brain Germinal Matrix	brain
40	chr15:77828600-77831800	Enhancers	H1 Cell Line	embryonic stem cell
41	chr15:77828600-77832000	Enhancers	Brain Angular Gyrus	brain
42	chr15:77828600-77832000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:77828600-77833200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr15:77828600-77834000	Enhancers	Primary B cells from cord blood	blood
45	chr15:77828600-77834200	Enhancers	Brain Substantia Nigra	brain
46	chr15:77828800-77830000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr15:77828800-77831400	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr15:77828800-77831600	Weak transcription	Placenta	Placenta
49	chr15:77828800-77832200	Enhancers	Brain Cingulate Gyrus	brain
50	chr15:77828800-77833400	Weak transcription	K562	blood

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