Variant report

Variant	rs12592578
Chromosome Location	chr15:82355225-82355226
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:82352320..82355355-chr15:82357295..82360406,3	K562	blood:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11073031	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11073032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12324755	0.86[JPT][hapmap]
rs12916310	0.87[CEU][hapmap]
rs12916537	0.94[CEU][hapmap];0.82[TSI][hapmap]
rs1503063	0.93[CEU][hapmap]
rs1503064	0.94[CEU][hapmap];0.82[TSI][hapmap]
rs1875676	0.89[CHB][hapmap];0.93[JPT][hapmap]
rs4563005	0.88[CEU][hapmap]
rs872332	0.93[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82351000-82355400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr15:82354600-82355400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:82354600-82355800	Enhancers	Primary hematopoietic stem cells	blood
4	chr15:82355000-82355800	Bivalent/Poised TSS	ES-WA7 Cell Line	embryonic stem cell
5	chr15:82355200-82355400	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
6	chr15:82355200-82355400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
7	chr15:82355200-82355400	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
8	chr15:82355200-82355400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr15:82355200-82355400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:82355200-82355400	Bivalent Enhancer	Dnd41	blood
11	chr15:82355200-82355600	Flanking Bivalent TSS/Enh	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr15:82355200-82355600	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
13	chr15:82355200-82355600	Enhancers	Primary B cells from cord blood	blood
14	chr15:82355200-82355600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
15	chr15:82355200-82355600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:82355200-82355600	Flanking Active TSS	Brain Germinal Matrix	brain
17	chr15:82355200-82355600	Active TSS	Pancreatic Islets	Pancreatic Islet
18	chr15:82355200-82355600	Active TSS	Right Ventricle	heart
19	chr15:82355200-82355600	Enhancers	K562	blood
20	chr15:82355200-82355800	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
21	chr15:82355200-82355800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr15:82355200-82355800	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
23	chr15:82355200-82355800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
24	chr15:82355200-82355800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
25	chr15:82355200-82355800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr15:82355200-82355800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:82355200-82355800	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr15:82355200-82355800	Flanking Active TSS	Fetal Brain Female	brain
29	chr15:82355200-82356000	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr15:82355200-82356000	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell

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