Variant report

Variant	rs1875676
Chromosome Location	chr15:82340819-82340820
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
MEX3B	TF binding region
ENSG00000164164	Chromatin interaction
ENSG00000149809	Chromatin interaction
ENSG00000254501	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10851960	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11073032	0.90[CHB][hapmap];0.87[JPT][hapmap]
rs12324750	0.90[CHB][hapmap]
rs12324755	1.00[CEU][hapmap];0.93[JPT][hapmap];0.81[AMR][1000 genomes]
rs12594210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1875677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875678	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28703792	0.85[AMR][1000 genomes]
rs2903612	0.81[CHB][hapmap]
rs57052284	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs872332	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3396541	chr15:82338522-82341070	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82335400-82341200	Active TSS	Fetal Kidney	kidney
2	chr15:82340400-82341200	Enhancers	Fetal Stomach	stomach
3	chr15:82340600-82341000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr15:82340600-82341000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr15:82340600-82341000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:82340600-82341000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr15:82340600-82341200	Enhancers	Brain Anterior Caudate	brain
8	chr15:82340600-82341200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr15:82340600-82341200	Enhancers	HSMMtube	muscle
10	chr15:82340600-82341600	Enhancers	Fetal Brain Male	brain
11	chr15:82340600-82343000	Enhancers	Fetal Muscle Leg	muscle
12	chr15:82340600-82344200	Weak transcription	Brain Substantia Nigra	brain
13	chr15:82340800-82341000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr15:82340800-82341200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:82340800-82341200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr15:82340800-82341400	Flanking Active TSS	Fetal Brain Female	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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