Variant report

Variant	rs2903612
Chromosome Location	chr15:82325781-82325782
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10851959	0.91[GIH][hapmap]
rs10851960	0.85[ASN][1000 genomes]
rs11634128	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12324297	0.89[ASN][1000 genomes]
rs12324750	0.90[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12915813	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1875676	0.81[CHB][hapmap]
rs2867553	0.91[GIH][hapmap];0.83[MEX][hapmap]
rs4778962	0.86[TSI][hapmap]
rs4778963	0.86[TSI][hapmap]
rs4778968	0.87[EUR][1000 genomes]
rs57052284	0.81[ASN][1000 genomes]
rs8039459	0.89[GIH][hapmap]
rs872332	0.95[CHB][hapmap];0.85[CHD][hapmap];0.82[ASN][1000 genomes]
rs905451	0.89[GIH][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs2903612	MTHFS	cis	parietal	SCAN
rs2903612	TBC1D2B	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain
2	chr15:82324000-82333200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr15:82325000-82331600	Weak transcription	K562	blood
4	chr15:82325000-82332600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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