Variant report

Variant	rs905451
Chromosome Location	chr15:82319768-82319769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:82313123..82316387-chr15:82317939..82321630,4	K562	blood:
2	chr15:82319110..82321365-chr15:82323956..82326070,2	K562	blood:
3	chr15:82313752..82316184-chr15:82319233..82321630,2	K562	blood:
4	chr15:82319183..82322755-chr15:82336037..82338445,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000222521	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10851959	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11073029	0.85[ASN][1000 genomes]
rs1112988	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1112989	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637633	0.84[EUR][1000 genomes]
rs12324764	0.87[CEU][hapmap];0.82[GIH][hapmap];0.81[MEX][hapmap];0.89[TSI][hapmap];0.85[EUR][1000 genomes]
rs12592956	0.84[EUR][1000 genomes]
rs1587706	0.87[CEU][hapmap];0.85[GIH][hapmap];0.86[MEX][hapmap];0.87[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs1963263	0.86[EUR][1000 genomes]
rs1969091	0.82[EUR][1000 genomes]
rs2089009	0.82[YRI][hapmap]
rs2867553	0.84[GIH][hapmap]
rs2903612	0.89[GIH][hapmap]
rs4528531	0.84[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4778660	0.83[CEU][hapmap]
rs4778961	0.91[CEU][hapmap];0.85[EUR][1000 genomes]
rs4778968	0.83[ASN][1000 genomes]
rs6495636	0.86[CEU][hapmap];0.85[GIH][hapmap];0.81[MEX][hapmap];0.87[TSI][hapmap];0.84[EUR][1000 genomes]
rs6495637	0.89[CEU][hapmap];0.85[EUR][1000 genomes]
rs6495638	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7163642	0.84[EUR][1000 genomes]
rs7163710	0.84[EUR][1000 genomes]
rs7164615	0.83[EUR][1000 genomes]
rs7165730	0.87[CEU][hapmap];0.84[EUR][1000 genomes]
rs7175313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7176867	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179070	0.91[CEU][hapmap];0.84[EUR][1000 genomes]
rs8039459	1.00[ASW][hapmap];0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];0.95[MEX][hapmap];0.95[MKK][hapmap];0.95[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain

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