Variant report

No.	Distal block	Cell Line	Cell type
1	chr15:82317214..82319609-chr15:82321176..82323045,3	MCF-7	breast:
2	chr15:82321898..82324305-chr15:82331852..82333474,2	MCF-7	breast:
3	chr15:82321986..82324134-chr15:82326509..82328137,2	K562	blood:

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10851959	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11073029	0.85[ASN][1000 genomes]
rs1112988	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1112989	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11637633	0.83[EUR][1000 genomes]
rs12324764	0.85[EUR][1000 genomes]
rs12592956	0.83[EUR][1000 genomes]
rs1587706	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1963263	0.85[EUR][1000 genomes]
rs1969091	0.81[EUR][1000 genomes]
rs4528531	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4778961	0.85[EUR][1000 genomes]
rs4778968	0.83[ASN][1000 genomes]
rs6495636	0.83[EUR][1000 genomes]
rs6495637	0.85[EUR][1000 genomes]
rs6495638	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7163642	0.83[EUR][1000 genomes]
rs7163710	0.83[EUR][1000 genomes]
rs7164615	0.82[EUR][1000 genomes]
rs7165730	0.83[EUR][1000 genomes]
rs7176867	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7179070	0.83[EUR][1000 genomes]
rs8039459	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs905451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82308200-82331600	Weak transcription	Fetal Brain Female	brain

Quick Search: