Variant report

Variant	rs1875678
Chromosome Location	chr15:82340954-82340955
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs10851960	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12324755	0.81[AMR][1000 genomes]
rs12594210	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1875676	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1875677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28703792	0.85[AMR][1000 genomes]
rs57052284	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs872332	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	esv3344827	chr15:82334647-82340995	Bivalent Enhancer Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases
4	esv3396541	chr15:82338522-82341070	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82335400-82341200	Active TSS	Fetal Kidney	kidney
2	chr15:82340400-82341200	Enhancers	Fetal Stomach	stomach
3	chr15:82340600-82341000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
4	chr15:82340600-82341000	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
5	chr15:82340600-82341000	Enhancers	H9 Cell Line	embryonic stem cell
6	chr15:82340600-82341000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
7	chr15:82340600-82341200	Enhancers	Brain Anterior Caudate	brain
8	chr15:82340600-82341200	Flanking Active TSS	Brain Germinal Matrix	brain
9	chr15:82340600-82341200	Enhancers	HSMMtube	muscle
10	chr15:82340600-82341600	Enhancers	Fetal Brain Male	brain
11	chr15:82340600-82343000	Enhancers	Fetal Muscle Leg	muscle
12	chr15:82340600-82344200	Weak transcription	Brain Substantia Nigra	brain
13	chr15:82340800-82341000	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
14	chr15:82340800-82341200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:82340800-82341200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
16	chr15:82340800-82341400	Flanking Active TSS	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links