Variant report

Variant	rs12595573
Chromosome Location	chr15:92620903-92620904
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:92518566..92519642-chr15:92620200..92621254,3	MCF-7	breast:
2	chr15:92398412..92399161-chr15:92620330..92621178,2	MCF-7	breast:
3	chr15:92392604..92393548-chr15:92620316..92621247,3	MCF-7	breast:
4	chr15:92525546..92526372-chr15:92620334..92621094,3	MCF-7	breast:
5	chr15:92491023..92491875-chr15:92620592..92621159,2	MCF-7	breast:
6	chr15:92493959..92494719-chr15:92620479..92621114,2	MCF-7	breast:
7	chr15:92395627..92396664-chr15:92620274..92621236,6	MCF-7	breast:
8	chr15:92429033..92430014-chr15:92620346..92621146,2	MCF-7	breast:
9	chr15:92249396..92250278-chr15:92620320..92621058,4	MCF-7	breast:
10	chr15:92399350..92399861-chr15:92620433..92621256,2	MCF-7	breast:
11	chr15:92396982..92397825-chr15:92620655..92621226,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000176463	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1040210	0.88[AMR][1000 genomes]
rs1040211	0.90[AMR][1000 genomes]
rs12593677	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4984320	0.84[AMR][1000 genomes]
rs4984321	0.86[AMR][1000 genomes]
rs4984331	0.84[AMR][1000 genomes]
rs4984332	0.84[AMR][1000 genomes]
rs4984333	0.88[AMR][1000 genomes]
rs4984334	0.84[AMR][1000 genomes]
rs74030471	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv870094	chr15:92367354-92631647	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1668	chr15:92585344-92635991	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:92613400-92621000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr15:92613600-92628600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr15:92614200-92621000	Enhancers	Fetal Heart	heart
4	chr15:92614200-92621200	Enhancers	Brain Hippocampus Middle	brain
5	chr15:92614400-92621000	Enhancers	Lung	lung
6	chr15:92614600-92626600	Weak transcription	Psoas Muscle	Psoas
7	chr15:92615000-92634200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:92616200-92621000	Enhancers	Left Ventricle	heart
9	chr15:92616400-92621000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:92616600-92622800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr15:92616800-92621600	Enhancers	Right Ventricle	heart
12	chr15:92617000-92621200	Enhancers	Brain Cingulate Gyrus	brain
13	chr15:92617400-92621000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:92617400-92621000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr15:92617400-92621600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr15:92617800-92622800	Weak transcription	Brain Anterior Caudate	brain
17	chr15:92618000-92622000	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr15:92618800-92625200	Weak transcription	Ovary	ovary
19	chr15:92619000-92625000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr15:92619200-92621400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:92619200-92630400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr15:92619200-92638000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:92619400-92621000	Enhancers	Fetal Brain Male	brain
24	chr15:92619400-92625200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
25	chr15:92619400-92638400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr15:92619600-92623200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:92619600-92625000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr15:92619800-92621400	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr15:92619800-92638000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr15:92620200-92621200	Enhancers	Primary T cells fromperipheralblood	blood
31	chr15:92620200-92621800	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr15:92620400-92621200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr15:92620400-92625000	Weak transcription	Brain Substantia Nigra	brain
34	chr15:92620600-92621000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr15:92620600-92621200	Enhancers	Primary hematopoietic stem cells	blood
36	chr15:92620600-92621200	Enhancers	Brain Angular Gyrus	brain
37	chr15:92620600-92621400	Enhancers	Primary neutrophils fromperipheralblood	blood
38	chr15:92620600-92625200	Weak transcription	Adipose Nuclei	Adipose
39	chr15:92620800-92621000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
40	chr15:92620800-92621000	Enhancers	Liver	Liver
41	chr15:92620800-92621000	Weak transcription	Fetal Thymus	thymus
42	chr15:92620800-92624800	Weak transcription	Fetal Brain Female	brain
43	chr15:92620800-92625200	Weak transcription	Right Atrium	heart
44	chr15:92620800-92625200	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:92620800-92635600	Weak transcription	Spleen	Spleen

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