Variant report

Variant	rs12597035
Chromosome Location	chr16:31985698-31985699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RXRA	chr16:31985524-31985954	HepG2	liver:	n/a	n/a
2	CTCF	chr16:31985668-31985820	GM13977	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
3	CTCF	chr16:31985584-31985918	K562	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
4	CTCF	chr16:31985620-31985770	GM12873	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
5	CTCF	chr16:31985680-31985830	HCT-116	colon:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
6	RAD21	chr16:31985584-31985781	HepG2	liver:	n/a	chr16:31985749-31985768 chr16:31985754-31985764
7	RAD21	chr16:31985595-31985881	SK-N-SH_RA	brain:	n/a	chr16:31985749-31985768 chr16:31985754-31985764 chr16:31985792-31985806
8	CTCF	chr16:31985660-31985810	HRPEpiC	eye:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
9	CTCF	chr16:31985649-31985879	GM10266	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
10	TCF12	chr16:31985628-31985859	GM12878	blood:	n/a	n/a
11	CTCF	chr16:31985562-31985918	A549	lung:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
12	CTCF	chr16:31985660-31985810	WERI-Rb-1	eye:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
13	CTCF	chr16:31985619-31985873	LNCaP	prostate:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
14	CTCF	chr16:31985660-31985810	Hela-S3	cervix:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
15	CTCF	chr16:31985632-31985873	LNCaP	prostate:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
16	CTCF	chr16:31985662-31985834	MCF-7	breast:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
17	CTCF	chr16:31985675-31985830	Hela-S3	cervix:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
18	CTCF	chr16:31985696-31985822	GM19239	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
19	CTCF	chr16:31985680-31985830	GM12892	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
20	CTCF	chr16:31985680-31985830	HVMF	connective:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
21	JUND	chr16:31985550-31985872	HepG2	liver:	n/a	n/a
22	CTCF	chr16:31985469-31986070	K562	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
23	CTCF	chr16:31985660-31985810	GM12865	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
24	CTCF	chr16:31985640-31985790	HMF	breast:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
25	CTCF	chr16:31985659-31985835	MCF-7	breast:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
26	CTCF	chr16:31985673-31985832	GM12891	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
27	CTCF	chr16:31985680-31985830	NB4	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
28	CTCF	chr16:31985658-31985842	GM20000	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
29	CTCF	chr16:31985654-31985878	Spleen_OC	spleen:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
30	CTCF	chr16:31985667-31985825	HepG2	liver:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
31	CTCF	chr16:31985553-31985900	K562	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
32	RXRA	chr16:31985607-31985921	GM12878	blood:	n/a	n/a
33	CTCF	chr16:31985660-31985810	GM12873	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
34	CTCF	chr16:31985660-31985810	GM12866	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
35	JUND	chr16:31985648-31985857	HepG2	liver:	n/a	n/a
36	RXRA	chr16:31985566-31985875	HepG2	liver:	n/a	n/a
37	CTCF	chr16:31985671-31985834	GM19240	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
38	CTCF	chr16:31985696-31985828	NHEK	skin:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
39	CTCF	chr16:31985660-31985810	Caco-2	colon:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
40	CTCF	chr16:31985589-31985781	SK-N-SH_RA	brain:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
41	CTCF	chr16:31985641-31985837	Gliobla	brain:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
42	CTCF	chr16:31985642-31985837	A549	lung:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
43	CTCF	chr16:31985560-31985710	GM06990	blood:	n/a	n/a
44	CTCF	chr16:31985680-31985830	BE2_C	brain:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
45	CTCF	chr16:31985698-31985820	ProgFib	skin:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
46	CTCF	chr16:31985560-31985710	HVMF	connective:	n/a	n/a
47	TCF3	chr16:31985549-31985855	GM12878	blood:	n/a	chr16:31985798-31985808 chr16:31985793-31985806
48	CTCF	chr16:31985660-31985810	GM12878	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
49	CTCF	chr16:31985679-31985831	MCF-7	breast:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763
50	CTCF	chr16:31985660-31985810	K562	blood:	n/a	chr16:31985751-31985764 chr16:31985749-31985765 chr16:31985748-31985766 chr16:31985753-31985763

Variant related genes	Relation type
ENSG00000260628	TF binding region

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9941272	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833196	chr16:31897381-32068953	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv1850460	chr16:31905688-32097085	Strong transcription ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv1848653	chr16:31934245-32394874	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
4	nsv905762	chr16:31937596-32047733	Enhancers Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv905763	chr16:31937596-32069996	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv1844876	chr16:31955076-32299703	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
7	esv1847122	chr16:31955076-32369798	Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv833197	chr16:31957340-32088251	Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1056441	chr16:31959362-32208780	Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
10	esv19582	chr16:31959900-32096806	Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
11	esv1843898	chr16:31961450-32375661	ZNF genes & repeats Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
12	nsv977960	chr16:31962966-31994790	Weak transcription Enhancers ZNF genes & repeats	TF binding region CpG island lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv469789	chr16:31964615-32119693	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
14	nsv482902	chr16:31964615-32119693	ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
15	esv1851140	chr16:31966787-32097285	Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
16	nsv978221	chr16:31968803-32007593	ZNF genes & repeats Enhancers	TF binding region CpG island lncRNA	3 gene(s)	inside rSNPs	diseases
17	nsv1055504	chr16:31971508-32180964	Active TSS Weak transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
18	nsv1058667	chr16:31971508-32413221	Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
19	nsv1063470	chr16:31971508-32655511	Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
20	nsv905764	chr16:31974450-32392598	Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
21	nsv1063872	chr16:31974698-32956058	Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	49 gene(s)	inside rSNPs	diseases
22	nsv1064477	chr16:31975157-32564737	Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Weak transcription Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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