Variant report

Variant	rs12603289
Chromosome Location	chr17:63444696-63444697
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12603313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58768287	0.90[AFR][1000 genomes]
rs6504311	0.83[EUR][1000 genomes]
rs72631311	0.85[EUR][1000 genomes]
rs72631312	0.85[EUR][1000 genomes]
rs72631313	0.85[EUR][1000 genomes]
rs8066556	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8072680	0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9889663	0.89[EUR][1000 genomes]
rs9898410	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056195	chr17:63439524-63512389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63444400-63445400	Enhancers	Fetal Muscle Leg	muscle
2	chr17:63444600-63445400	Bivalent Enhancer	HSMMtube	muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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