Variant report

Variant	rs72631313
Chromosome Location	chr17:63457375-63457376
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:63456051..63458203-chr17:63527018..63529028,2	MCF-7	breast:
2	chr17:63456566..63460095-chr17:63461985..63464901,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12603289	0.85[EUR][1000 genomes]
rs12603313	0.85[EUR][1000 genomes]
rs57335864	0.91[EUR][1000 genomes]
rs6504311	1.00[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs72631311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72631312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8066556	0.89[EUR][1000 genomes]
rs8072680	0.93[EUR][1000 genomes]
rs9889663	0.91[EUR][1000 genomes]
rs9898410	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056195	chr17:63439524-63512389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63451800-63457400	Enhancers	Fetal Thymus	thymus
2	chr17:63452800-63459600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr17:63453200-63459400	Weak transcription	Fetal Lung	lung
4	chr17:63453600-63457400	Weak transcription	Psoas Muscle	Psoas
5	chr17:63455000-63457800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr17:63455200-63460400	Weak transcription	Right Ventricle	heart
7	chr17:63455400-63457400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr17:63455800-63457400	Enhancers	Placenta	Placenta
9	chr17:63456200-63457600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:63456200-63459400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:63456400-63461400	Weak transcription	Lung	lung
12	chr17:63456600-63459200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr17:63456600-63459400	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr17:63456600-63459400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr17:63456600-63461600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr17:63456600-63467600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr17:63456800-63457400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr17:63456800-63459200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr17:63456800-63459400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr17:63457000-63457800	Weak transcription	Right Atrium	heart
21	chr17:63457200-63457400	Enhancers	Aorta	Aorta
22	chr17:63457200-63457600	Enhancers	Left Ventricle	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links