Variant report

Variant	rs57335864
Chromosome Location	chr17:63460241-63460242
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs6504311	0.89[EUR][1000 genomes]
rs72631311	0.91[EUR][1000 genomes]
rs72631312	0.83[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs72631313	0.91[EUR][1000 genomes]
rs8066556	0.80[EUR][1000 genomes]
rs8072680	0.83[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs9889663	0.82[EUR][1000 genomes]
rs9898410	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1056195	chr17:63439524-63512389	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63455200-63460400	Weak transcription	Right Ventricle	heart
2	chr17:63456400-63461400	Weak transcription	Lung	lung
3	chr17:63456600-63461600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr17:63456600-63467600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr17:63457800-63460600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr17:63458000-63461200	Weak transcription	Right Atrium	heart
7	chr17:63459200-63460400	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr17:63459200-63460400	Enhancers	Left Ventricle	heart
9	chr17:63459400-63460400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr17:63459400-63460400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr17:63459600-63460600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr17:63459800-63460400	Enhancers	Skeletal Muscle Female	skeletal muscle
13	chr17:63460000-63460400	Enhancers	Aorta	Aorta
14	chr17:63460000-63462600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr17:63460000-63467000	Weak transcription	Fetal Lung	lung
16	chr17:63460000-63468600	Weak transcription	Ovary	ovary
17	chr17:63460200-63463000	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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