The 2.0 version of rSNPBase

Variant report

Variant rs12604438
Chromosome Location chr18:9349084-9349085
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:81 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr18:9335400-9369400 Weak transcription Pancreas Pancrea
2 chr18:9335400-9371400 Weak transcription Gastric stomach
3 chr18:9335600-9366200 Weak transcription Left Ventricle heart
4 chr18:9335600-9372600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr18:9335800-9357600 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
6 chr18:9335800-9366200 Weak transcription Placenta Amnion Placenta Amnion
7 chr18:9335800-9367600 Weak transcription Fetal Thymus thymus
8 chr18:9335800-9367600 Weak transcription Lung lung
9 chr18:9335800-9370200 Weak transcription Adipose Nuclei Adipose
10 chr18:9336000-9355600 Weak transcription Pancreatic Islets Pancreatic Islet
11 chr18:9336000-9366200 Weak transcription Brain Angular Gyrus brain
12 chr18:9336200-9361400 Weak transcription Aorta Aorta
13 chr18:9336400-9349400 Weak transcription Fetal Intestine Small intestine
14 chr18:9338200-9354400 Weak transcription Skeletal Muscle Male skeletal muscle
15 chr18:9338400-9361600 Weak transcription Brain Cingulate Gyrus brain
16 chr18:9338400-9366200 Weak transcription Brain Anterior Caudate brain
17 chr18:9338800-9366000 Weak transcription Brain Hippocampus Middle brain
18 chr18:9339600-9365600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
19 chr18:9341000-9371800 Weak transcription Fetal Adrenal Gland Adrenal Gland
20 chr18:9341200-9361400 Weak transcription Sigmoid Colon Sigmoid Colon
21 chr18:9341200-9366400 Weak transcription Brain Substantia Nigra brain
22 chr18:9341200-9367400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
23 chr18:9341200-9391400 Weak transcription Liver Liver
24 chr18:9341200-9403800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
25 chr18:9341400-9366200 Weak transcription Brain Inferior Temporal Lobe brain
26 chr18:9344000-9366000 Weak transcription HUES48 Cell Line embryonic stem cell
27 chr18:9344000-9367400 Weak transcription Primary hematopoietic stem cells blood
28 chr18:9344200-9361400 Weak transcription Brain Germinal Matrix brain
29 chr18:9344200-9367600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
30 chr18:9344200-9367800 Weak transcription Primary B cells from cord blood blood
31 chr18:9344400-9360600 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
32 chr18:9344400-9404200 Weak transcription Primary T cells from cord blood blood
33 chr18:9344800-9360200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
34 chr18:9345000-9361800 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
35 chr18:9345200-9367400 Weak transcription Fetal Brain Female brain
36 chr18:9345600-9367000 Weak transcription Fetal Intestine Large intestine
37 chr18:9345600-9367400 Weak transcription Placenta Placenta
38 chr18:9345600-9377600 Weak transcription Skeletal Muscle Female skeletal muscle
39 chr18:9346600-9361400 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr18:9346800-9361400 Weak transcription Fetal Muscle Trunk muscle
41 chr18:9346800-9361400 Weak transcription Fetal Muscle Leg muscle
42 chr18:9347600-9349200 Enhancers Rectal Smooth Muscle rectum
43 chr18:9347600-9349200 Enhancers HUVEC blood vessel
44 chr18:9347600-9349400 Enhancers Osteobl bone
45 chr18:9347800-9349400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr18:9348000-9349200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
47 chr18:9348000-9349200 Flanking Active TSS GM12878-XiMat blood
48 chr18:9348000-9349200 Enhancers Hela-S3 cervix
49 chr18:9348000-9349400 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
50 chr18:9348000-9349400 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin

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Last update: Aug 31, 2015