Variant report

Variant	rs12607709
Chromosome Location	chr18:45495577-45495578
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:45495428..45497776-chr18:45515164..45517181,2	K562	blood:
2	chr18:45490600..45492512-chr18:45494692..45496408,2	K562	blood:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12605563	0.84[ASN][1000 genomes]
rs34057660	0.83[ASN][1000 genomes]
rs35171313	0.96[ASN][1000 genomes]
rs35443464	0.83[ASN][1000 genomes]
rs4344818	0.92[ASN][1000 genomes]
rs4940159	0.82[ASN][1000 genomes]
rs9304358	0.86[CEU][hapmap];0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45494000-45496000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr18:45494000-45496000	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr18:45494200-45496200	Enhancers	H9 Cell Line	embryonic stem cell
4	chr18:45494200-45496600	Enhancers	HSMM	muscle
5	chr18:45494400-45495800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr18:45494400-45495800	Enhancers	Muscle Satellite Cultured Cells	--
7	chr18:45494400-45496400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr18:45494400-45498200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr18:45494600-45495600	Enhancers	Osteobl	bone
10	chr18:45494600-45495800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr18:45494600-45495800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr18:45494600-45496200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr18:45494600-45499000	Weak transcription	Ovary	ovary
14	chr18:45494800-45496000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:45494800-45497400	Weak transcription	Fetal Heart	heart
16	chr18:45495000-45495800	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr18:45495000-45495800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr18:45495200-45496000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr18:45495200-45496200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr18:45495200-45496400	Enhancers	HSMMtube	muscle
21	chr18:45495200-45496800	Enhancers	NH-A	brain
22	chr18:45495200-45497800	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:45495200-45498000	Enhancers	Hela-S3	cervix
24	chr18:45495400-45495800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr18:45495400-45496000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr18:45495400-45496200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
27	chr18:45495400-45496600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr18:45495400-45497600	Enhancers	A549	lung
29	chr18:45495400-45498800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr18:45495400-45501600	Weak transcription	Placenta	Placenta

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