Variant report

Variant	rs4940159
Chromosome Location	chr18:45508179-45508180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12605563	0.95[ASN][1000 genomes]
rs12607709	0.82[ASN][1000 genomes]
rs34057660	0.85[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs35443464	0.97[ASN][1000 genomes]
rs4344818	0.87[ASN][1000 genomes]
rs59417456	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs9304358	0.92[CHB][hapmap];0.88[JPT][hapmap];0.85[ASN][1000 genomes]
rs9954662	0.85[GIH][hapmap];1.00[MEX][hapmap];0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv978736	chr18:45504781-45511894	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	esv3424747	chr18:45507779-45510327	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45501800-45510200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:45502200-45510000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:45505000-45508600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr18:45506200-45508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr18:45506200-45510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr18:45506400-45508200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:45506600-45509600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr18:45507000-45508400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr18:45507000-45508400	Enhancers	iPS-18 Cell Line	embryonic stem cell
10	chr18:45507200-45508200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr18:45507600-45508200	Enhancers	iPS-20b Cell Line	embryonic stem cell
12	chr18:45507600-45508400	Enhancers	H1 Cell Line	embryonic stem cell
13	chr18:45507600-45508400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr18:45507600-45508400	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr18:45507600-45508400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr18:45507600-45508600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr18:45507800-45508200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:45507800-45508600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
19	chr18:45508000-45508200	Enhancers	Fetal Brain Male	brain
20	chr18:45508000-45508400	Enhancers	iPS-15b Cell Line	embryonic stem cell
21	chr18:45508000-45508600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr18:45508000-45508600	Enhancers	Fetal Thymus	thymus

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