Variant report

Variant	rs9954662
Chromosome Location	chr18:45532918-45532919
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:45529545..45532435-chr18:45532709..45536356,5	MCF-7	breast:
2	chr18:45455940..45458725-chr18:45529487..45533323,5	MCF-7	breast:
3	chr18:45529640..45533731-chr18:45547574..45549695,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000175387	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11662576	0.82[ASN][1000 genomes]
rs4644917	0.80[EUR][1000 genomes]
rs4940159	0.80[AMR][1000 genomes]
rs59417456	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6507795	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8086860	0.80[EUR][1000 genomes]
rs9304358	0.93[CEU][hapmap];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45529400-45533000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr18:45529600-45533000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr18:45530400-45534200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr18:45530400-45534200	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr18:45530400-45534200	Weak transcription	Psoas Muscle	Psoas
6	chr18:45530400-45534400	Weak transcription	Aorta	Aorta
7	chr18:45530400-45534400	Weak transcription	Fetal Heart	heart
8	chr18:45530600-45534000	Weak transcription	Adipose Nuclei	Adipose
9	chr18:45530600-45534000	Weak transcription	Fetal Kidney	kidney
10	chr18:45530600-45534000	Weak transcription	Left Ventricle	heart
11	chr18:45530600-45534000	Weak transcription	Lung	lung
12	chr18:45530600-45534200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr18:45530600-45534200	Weak transcription	Stomach Mucosa	stomach
14	chr18:45530600-45534400	Weak transcription	Gastric	stomach
15	chr18:45530600-45534400	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr18:45530600-45534400	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr18:45530800-45533000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr18:45530800-45533200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr18:45530800-45533800	Weak transcription	Spleen	Spleen
20	chr18:45530800-45534000	Weak transcription	Pancreas	Pancrea
21	chr18:45530800-45534000	Weak transcription	Right Ventricle	heart
22	chr18:45530800-45534000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr18:45530800-45534200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr18:45530800-45534200	Weak transcription	Duodenum Mucosa	Duodenum
25	chr18:45530800-45534200	Weak transcription	Rectal Mucosa Donor 31	rectum
26	chr18:45531000-45534000	Weak transcription	NH-A	brain
27	chr18:45531000-45534200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr18:45531000-45534200	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr18:45531000-45534200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr18:45531000-45534200	Weak transcription	HSMMtube	muscle
31	chr18:45531000-45534400	Enhancers	Hela-S3	cervix
32	chr18:45531200-45533000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr18:45531200-45533400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr18:45531200-45533800	Weak transcription	Fetal Muscle Leg	muscle
35	chr18:45531200-45533800	Weak transcription	Placenta	Placenta
36	chr18:45531200-45534000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr18:45531200-45534000	Weak transcription	HSMM	muscle
38	chr18:45531200-45534000	Weak transcription	HUVEC	blood vessel
39	chr18:45531200-45534200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
40	chr18:45531200-45534200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr18:45531200-45534200	Weak transcription	Right Atrium	heart
42	chr18:45531200-45534200	Weak transcription	Thymus	Thymus
43	chr18:45531200-45534400	Weak transcription	Primary hematopoietic stem cells	blood
44	chr18:45531200-45534400	Weak transcription	Small Intestine	intestine
45	chr18:45531400-45533200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
46	chr18:45531400-45533200	Weak transcription	Fetal Thymus	thymus
47	chr18:45531400-45533800	Weak transcription	Dnd41	blood
48	chr18:45531400-45534200	Weak transcription	HMEC	breast
49	chr18:45531800-45533000	Weak transcription	A549	lung
50	chr18:45532800-45533200	Enhancers	HUES6 Cell Line	embryonic stem cell

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