Variant report

Variant	rs59417456
Chromosome Location	chr18:45516051-45516052
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12605563	0.84[ASN][1000 genomes]
rs34057660	0.85[ASN][1000 genomes]
rs35443464	0.83[ASN][1000 genomes]
rs4644917	0.84[EUR][1000 genomes]
rs4940159	0.88[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6507795	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8084362	0.80[EUR][1000 genomes]
rs8086860	0.84[EUR][1000 genomes]
rs9304358	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9954662	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr18:45510600-45522000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr18:45514000-45521800	Weak transcription	HSMMtube	muscle
4	chr18:45514200-45518800	Weak transcription	Fetal Brain Male	brain
5	chr18:45514600-45520000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr18:45515400-45516200	Enhancers	Hela-S3	cervix
7	chr18:45515400-45516400	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr18:45515600-45516200	Enhancers	H1 Cell Line	embryonic stem cell
9	chr18:45515600-45516200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:45515600-45516200	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr18:45515600-45516200	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr18:45515600-45516200	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr18:45515600-45516200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
14	chr18:45515600-45516200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr18:45515600-45518200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr18:45515800-45516400	Enhancers	Placenta Amnion	Placenta Amnion
17	chr18:45516000-45523800	Weak transcription	iPS-15b Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links