Variant report

Variant	rs12609559
Chromosome Location	chr19:51723146-51723147
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12972523	0.85[EUR][1000 genomes]
rs12973135	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs12980247	0.85[EUR][1000 genomes]
rs1566577	1.00[CEU][hapmap]
rs1568004	1.00[CEU][hapmap]
rs2173880	1.00[CEU][hapmap]
rs34806626	0.85[EUR][1000 genomes]
rs34990128	0.85[EUR][1000 genomes]
rs3896361	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs3987765	1.00[CEU][hapmap]
rs4082664	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs71358817	0.85[EUR][1000 genomes]
rs7257445	0.85[EUR][1000 genomes]
rs73612233	0.85[EUR][1000 genomes]
rs73612235	0.85[EUR][1000 genomes]
rs73932887	0.86[EUR][1000 genomes]
rs73932888	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv3327113	chr19:51714613-51728152	Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51715400-51729200	Weak transcription	Spleen	Spleen
2	chr19:51719400-51727600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr19:51721200-51726800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr19:51722000-51723400	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr19:51722000-51723800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:51722200-51723600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr19:51722800-51723400	Enhancers	Primary hematopoietic stem cells	blood
8	chr19:51722800-51723600	Weak transcription	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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