Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51704918..51706630-chr19:51708634..51710252,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10423169	1.00[ASN][1000 genomes]
rs11878816	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12609559	0.85[EUR][1000 genomes]
rs12971624	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12973135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12980247	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566577	1.00[CEU][hapmap]
rs1568004	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2173879	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34806626	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990128	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3826666	1.00[CHB][hapmap]
rs3896361	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3987765	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4082664	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71358817	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7252160	1.00[CHB][hapmap]
rs7252722	1.00[CHB][hapmap]
rs7252750	1.00[CHB][hapmap]
rs7257445	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612233	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612235	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73613991	1.00[ASN][1000 genomes]
rs8106173	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	nsv978754	chr19:51705011-51710491	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51704600-51706800	Enhancers	Monocytes-CD14+_RO01746	blood
2	chr19:51704800-51709000	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:51704800-51715000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:51706000-51708000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr19:51706000-51708000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:51706400-51708000	Enhancers	Primary neutrophils fromperipheralblood	blood
7	chr19:51706400-51708000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr19:51706600-51707600	Enhancers	Primary hematopoietic stem cells	blood

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