Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:51714707..51716374-chr19:51723614..51726003,2	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10423169	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11878816	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12972523	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12973135	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12980247	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1566577	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs1568004	1.00[CEU][hapmap]
rs2134073	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2173879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2173880	1.00[CEU][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34806626	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34990128	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3896361	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3987765	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4082664	1.00[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71358817	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7257445	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612233	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73612235	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73613991	1.00[ASN][1000 genomes]
rs8106173	0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv3327113	chr19:51714613-51728152	Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51713400-51715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr19:51713400-51715800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
3	chr19:51713600-51715600	Enhancers	Primary hematopoietic stem cells	blood
4	chr19:51714000-51715400	Enhancers	Spleen	Spleen
5	chr19:51714600-51715400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr19:51714600-51716000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr19:51714800-51715400	Bivalent Enhancer	Placenta	Placenta
8	chr19:51715000-51715400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr19:51715000-51717200	Enhancers	Primary neutrophils fromperipheralblood	blood
10	chr19:51715200-51715800	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr19:51715200-51716800	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr19:51715200-51719600	Weak transcription	Hela-S3	cervix
13	chr19:51715200-51721600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

Quick Search: