Variant report

Variant	rs12610951
Chromosome Location	chr19:37972805-37972806
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11670245	1.00[LWK][hapmap]
rs3764662	1.00[LWK][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv918028	chr19:37020645-38014526	Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	esv2757695	chr19:37794850-38051606	Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	esv2758759	chr19:37794850-38051606	ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1057688	chr19:37828019-37988253	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv833819	chr19:37899501-38051599	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
6	nsv1056753	chr19:37963714-38015943	Weak transcription Active TSS Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv579467	chr19:37969499-37972805	ZNF genes & repeats Weak transcription Strong transcription	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:37961000-37973000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr19:37961000-37974000	Weak transcription	Stomach Mucosa	stomach
3	chr19:37961400-37980400	ZNF genes & repeats	Liver	Liver
4	chr19:37962200-37976200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr19:37962200-37976400	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
6	chr19:37962200-37977800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr19:37962200-37977800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr19:37962400-37977600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
9	chr19:37962400-37979200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr19:37963200-37976600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
11	chr19:37963200-37981000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr19:37963800-37976400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
13	chr19:37963800-37985600	ZNF genes & repeats	Adipose Nuclei	Adipose
14	chr19:37964000-37976400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
15	chr19:37964200-37977600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:37966200-37976400	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr19:37966200-37979200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr19:37966200-37984000	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
19	chr19:37966400-37976800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
20	chr19:37966600-37976000	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
21	chr19:37966600-37976200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
22	chr19:37966600-37977800	ZNF genes & repeats	Fetal Lung	lung
23	chr19:37966600-37977800	ZNF genes & repeats	Dnd41	blood
24	chr19:37966800-37977600	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr19:37967800-37973000	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr19:37968200-37973000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr19:37969400-37977400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
28	chr19:37969400-37978200	ZNF genes & repeats	Brain Hippocampus Middle	brain
29	chr19:37969600-37975800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr19:37969800-37976400	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
31	chr19:37970200-37978000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr19:37970200-37979000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
33	chr19:37970400-37973000	Weak transcription	Fetal Heart	heart
34	chr19:37970800-37977800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
35	chr19:37971000-37973800	ZNF genes & repeats	Fetal Intestine Small	intestine
36	chr19:37971000-37974000	ZNF genes & repeats	Aorta	Aorta
37	chr19:37971000-37974000	ZNF genes & repeats	Lung	lung
38	chr19:37971000-37974200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr19:37971000-37974200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
40	chr19:37971000-37974200	ZNF genes & repeats	Spleen	Spleen
41	chr19:37971000-37975800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr19:37971000-37976000	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
43	chr19:37971000-37976200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
44	chr19:37971000-37976200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
45	chr19:37971000-37976400	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr19:37971000-37976600	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
47	chr19:37971000-37977000	ZNF genes & repeats	Left Ventricle	heart
48	chr19:37971000-37977000	ZNF genes & repeats	Ovary	ovary
49	chr19:37971000-37977200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
50	chr19:37971000-37977800	ZNF genes & repeats	Brain Germinal Matrix	brain

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