Variant report

Variant rs12611045
Chromosome Location chr19:41119273-41119274
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:117 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr19:41106000-41136800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr19:41109800-41122600 Weak transcription Aorta Aorta
3 chr19:41114400-41119400 Weak transcription Ovary ovary
4 chr19:41116400-41120000 Enhancers Stomach Mucosa stomach
5 chr19:41116600-41119400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
6 chr19:41116600-41119400 Weak transcription Right Atrium heart
7 chr19:41116600-41119800 Weak transcription NHLF lung
8 chr19:41116600-41137000 Weak transcription Psoas Muscle Psoas
9 chr19:41117000-41119400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
10 chr19:41117000-41119400 Weak transcription NHDF-Ad bronchial
11 chr19:41117000-41119800 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
12 chr19:41117000-41121800 Weak transcription Hela-S3 cervix
13 chr19:41117000-41140200 Weak transcription Brain Angular Gyrus brain
14 chr19:41117200-41119600 Weak transcription Brain Inferior Temporal Lobe brain
15 chr19:41117200-41120400 Weak transcription Muscle Satellite Cultured Cells --
16 chr19:41117400-41119400 Weak transcription Brain Hippocampus Middle brain
17 chr19:41117400-41119400 Weak transcription Brain Substantia Nigra brain
18 chr19:41117400-41125200 Weak transcription Brain Cingulate Gyrus brain
19 chr19:41118200-41119400 ZNF genes & repeats H9 Derived Neuron Cultured Cells ES cell derived
20 chr19:41118200-41119400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
21 chr19:41118400-41120400 Bivalent/Poised TSS Rectal Smooth Muscle rectum
22 chr19:41118800-41119800 Flanking Active TSS Primary T helper 17 cells PMA-I stimulated --
23 chr19:41118800-41120600 Transcr. at gene 5' and 3' Foreskin Fibroblast Primary Cells skin01 Skin
24 chr19:41118800-41121200 Active TSS H9 Cell Line embryonic stem cell
25 chr19:41118800-41121400 Active TSS Foreskin Keratinocyte Primary Cells skin03 Skin
26 chr19:41119000-41119400 Active TSS Foreskin Fibroblast Primary Cells skin02 Skin
27 chr19:41119000-41119400 Flanking Bivalent TSS/Enh Fetal Intestine Large intestine
28 chr19:41119000-41119400 Enhancers Gastric stomach
29 chr19:41119000-41119400 Enhancers Lung lung
30 chr19:41119000-41119600 Flanking Active TSS Foreskin Melanocyte Primary Cells skin03 Skin
31 chr19:41119000-41119800 Flanking Active TSS Colonic Mucosa Colon
32 chr19:41119000-41119800 Flanking Active TSS K562 blood
33 chr19:41119000-41120000 Flanking Active TSS Monocytes-CD14+_RO01746 blood
34 chr19:41119000-41120400 Active TSS Foreskin Keratinocyte Primary Cells skin02 Skin
35 chr19:41119000-41120600 Active TSS Osteobl bone
36 chr19:41119000-41121000 Active TSS hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
37 chr19:41119000-41121000 Active TSS ES-UCSF4 Cell Line embryonic stem cell
38 chr19:41119000-41121000 Flanking Active TSS Primary T helper naive cells fromperipheralblood blood
39 chr19:41119000-41121000 Flanking Bivalent TSS/Enh Fetal Adrenal Gland Adrenal Gland
40 chr19:41119000-41121200 Active TSS hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
41 chr19:41119000-41121200 Active TSS HUES48 Cell Line embryonic stem cell
42 chr19:41119000-41121200 Active TSS iPS-15b Cell Line embryonic stem cell
43 chr19:41119000-41121200 Active TSS iPS-18 Cell Line embryonic stem cell
44 chr19:41119000-41121200 Flanking Active TSS Primary T cells fromperipheralblood blood
45 chr19:41119000-41121400 Active TSS HUES6 Cell Line embryonic stem cell
46 chr19:41119000-41121400 Active TSS HUES64 Cell Line embryonic stem cell
47 chr19:41119000-41121400 Active TSS iPS-20b Cell Line embryonic stem cell
48 chr19:41119000-41121400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr19:41119000-41121400 Flanking Active TSS Primary hematopoietic stem cells G-CSF-mobilized Male --
50 chr19:41119200-41119400 Flanking Bivalent TSS/Enh H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived

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