Variant report

Variant	rs12614779
Chromosome Location	chr2:124867864-124867865
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10496623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10496625	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs12622072	1.00[YRI][hapmap]
rs17010780	1.00[YRI][hapmap]
rs17010809	1.00[YRI][hapmap];0.91[AFR][1000 genomes]
rs17010810	1.00[YRI][hapmap]
rs17010817	1.00[YRI][hapmap]
rs17010819	1.00[YRI][hapmap]
rs17010881	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4848911	1.00[YRI][hapmap]
rs55718116	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7585692	1.00[YRI][hapmap]
rs7591828	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531408	chr2:124727329-125011247	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:124867000-124868600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr2:124867200-124868400	Enhancers	iPS-18 Cell Line	embryonic stem cell
3	chr2:124867200-124868400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr2:124867200-124868600	Enhancers	H1 Cell Line	embryonic stem cell
5	chr2:124867400-124868000	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr2:124867400-124868000	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr2:124867400-124868800	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:124867600-124870400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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