Variant report

Variant	rs12615029
Chromosome Location	chr2:189290420-189290421
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10175372	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs10931360	0.90[AFR][1000 genomes]
rs12473726	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4277487	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4278899	1.00[YRI][hapmap]
rs4541224	0.90[AFR][1000 genomes]
rs4666760	1.00[AMR][1000 genomes]
rs4667224	1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6434281	0.90[AFR][1000 genomes]
rs6736410	1.00[YRI][hapmap];1.00[AMR][1000 genomes]
rs7571338	1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	esv274925	chr2:189285245-189291333	ZNF genes & repeats Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189276600-189290800	Weak transcription	Placenta	Placenta
2	chr2:189283400-189292200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:189285400-189290800	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:189285600-189291600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr2:189285600-189292600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr2:189285600-189318800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:189285800-189318200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr2:189287800-189294000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr2:189289000-189293400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:189289200-189293600	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr2:189289400-189292200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:189289600-189292000	Enhancers	ES-I3 Cell Line	embryonic stem cell
13	chr2:189289600-189292800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr2:189289800-189291800	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:189290000-189291800	Weak transcription	A549	lung
16	chr2:189290000-189292600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr2:189290200-189290600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr2:189290200-189292800	Enhancers	H1 Cell Line	embryonic stem cell
19	chr2:189290200-189293400	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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