Variant report

Variant	rs4541224
Chromosome Location	chr2:189327505-189327506
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10175372	1.00[AFR][1000 genomes]
rs10931360	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12615029	0.90[AFR][1000 genomes]
rs4277487	0.90[AFR][1000 genomes]
rs4667224	0.81[AFR][1000 genomes]
rs6434281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189306600-189339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr2:189317600-189329400	Weak transcription	Ovary	ovary
3	chr2:189319400-189343400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:189321600-189329000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr2:189321600-189330000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr2:189321800-189339000	Weak transcription	Fetal Stomach	stomach
7	chr2:189322000-189329000	Weak transcription	Gastric	stomach
8	chr2:189322400-189330400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr2:189324000-189328200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:189325200-189329000	Weak transcription	Pancreas	Pancrea
11	chr2:189326200-189327600	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr2:189326600-189330800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr2:189327000-189328000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr2:189327000-189329000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr2:189327000-189330800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr2:189327200-189327800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr2:189327200-189329200	Weak transcription	H9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links