Variant report
| Variant | rs12615034 |
|---|---|
| Chromosome Location | chr2:21462096-21462097 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs10197693 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10197800 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs10197924 | 0.82[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs11682616 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11686304 | 0.94[ASN][1000 genomes] |
| rs11689154 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs11690578 | 0.81[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs12619468 | 0.93[ASN][1000 genomes] |
| rs12621605 | 0.93[ASN][1000 genomes] |
| rs13386151 | 0.94[ASN][1000 genomes] |
| rs13414558 | 0.92[ASN][1000 genomes] |
| rs13414740 | 0.92[ASN][1000 genomes] |
| rs4352258 | 0.93[ASN][1000 genomes] |
| rs4567965 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4665243 | 0.82[AMR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4665632 | 0.92[ASN][1000 genomes] |
| rs4665633 | 0.92[ASN][1000 genomes] |
| rs4665638 | 0.87[EUR][1000 genomes] |
| rs55835632 | 0.82[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs62133423 | 0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs950661 | 0.94[ASN][1000 genomes] |
| rs950662 | 0.94[ASN][1000 genomes] |
mRNA abundance (count:2)
| SNP | Gene | Cis/trans | Tissue | Source |
|---|---|---|---|---|
| rs12615034 | TP53I3 | cis | cerebellum | SCAN |
| rs12615034 | PFN4 | cis | cerebellum | SCAN |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:21461800-21462200 | Enhancers | Aorta | Aorta |
