Variant report

Variant	rs12616531
Chromosome Location	chr2:123919143-123919144
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10169293	0.92[ASN][1000 genomes]
rs12620258	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12711611	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13408886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13408891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34955457	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6712425	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7559036	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7585942	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv998754	chr2:123898234-123930964	Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	esv2755383	chr2:123915791-123928492	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123918600-123919200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr2:123918600-123919200	Enhancers	Fetal Lung	lung
3	chr2:123918600-123919400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr2:123918800-123919200	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr2:123919000-123919400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:123919000-123919400	Enhancers	HUES64 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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