Variant report

Variant	rs12620258
Chromosome Location	chr2:123861824-123861825
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10496606	0.83[ASN][1000 genomes]
rs10864884	0.84[ASN][1000 genomes]
rs11122938	0.84[ASN][1000 genomes]
rs11676607	0.95[ASN][1000 genomes]
rs11900012	0.82[ASN][1000 genomes]
rs12477691	0.84[ASN][1000 genomes]
rs12616531	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12711611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12997587	0.84[ASN][1000 genomes]
rs13010429	0.84[ASN][1000 genomes]
rs13010613	0.84[ASN][1000 genomes]
rs13010816	0.97[ASN][1000 genomes]
rs13016491	0.95[ASN][1000 genomes]
rs13018548	0.97[ASN][1000 genomes]
rs13033509	0.83[ASN][1000 genomes]
rs13033663	0.84[ASN][1000 genomes]
rs13033813	0.84[ASN][1000 genomes]
rs13408886	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13408891	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1507666	0.82[ASN][1000 genomes]
rs1515164	0.84[ASN][1000 genomes]
rs1515165	0.84[ASN][1000 genomes]
rs1515166	0.84[ASN][1000 genomes]
rs1605496	0.84[ASN][1000 genomes]
rs1605497	0.84[ASN][1000 genomes]
rs1605498	0.84[ASN][1000 genomes]
rs1605499	0.84[ASN][1000 genomes]
rs17368508	0.95[ASN][1000 genomes]
rs17368634	0.84[ASN][1000 genomes]
rs17465799	0.84[ASN][1000 genomes]
rs2419069	0.84[ASN][1000 genomes]
rs34256372	0.95[ASN][1000 genomes]
rs34955457	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35870013	0.84[ASN][1000 genomes]
rs4848822	0.82[ASN][1000 genomes]
rs6541877	0.82[ASN][1000 genomes]
rs6541878	0.84[ASN][1000 genomes]
rs6712425	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67156328	0.84[ASN][1000 genomes]
rs6756049	0.84[ASN][1000 genomes]
rs7559036	0.88[AFR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7585942	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492280	chr2:123447662-123973577	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2760647	chr2:123678437-124619697	Weak transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1010200	chr2:123816326-123887210	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:123861400-123862000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr2:123861400-123862000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived

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