Variant report

Variant	rs12617322
Chromosome Location	chr2:142788682-142788683
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10496911	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs12617185	1.00[EUR][1000 genomes]
rs12617190	1.00[EUR][1000 genomes]
rs12617257	0.93[EUR][1000 genomes]
rs12617281	0.85[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs12617486	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs12620001	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12623699	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs12623786	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13394203	0.81[CHB][hapmap];0.81[JPT][hapmap]
rs16847916	1.00[EUR][1000 genomes]
rs16847932	0.83[CHB][hapmap];1.00[YRI][hapmap]
rs16847936	0.82[JPT][hapmap];1.00[EUR][1000 genomes]
rs16847942	0.81[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap]
rs2029143	0.81[ASN][1000 genomes]
rs59095262	1.00[EUR][1000 genomes]
rs6739226	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142787800-142788800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr2:142788600-142790400	Weak transcription	NH-A	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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