Variant report

Variant	rs16847916
Chromosome Location	chr2:142765500-142765501
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12617185	1.00[EUR][1000 genomes]
rs12617190	1.00[EUR][1000 genomes]
rs12617257	0.93[EUR][1000 genomes]
rs12617281	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12617322	1.00[EUR][1000 genomes]
rs12617486	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12620001	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12623786	1.00[EUR][1000 genomes]
rs16847914	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847915	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16847936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2196354	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2217842	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs59095262	1.00[EUR][1000 genomes]
rs6739226	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs965765	0.93[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875252	chr2:142666003-142768518	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:142765400-142765800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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