Variant report

Variant	rs965765
Chromosome Location	chr2:142769882-142769883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10496910	0.84[CHB][hapmap]
rs10496911	0.85[CHB][hapmap]
rs1191971	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs12617486	0.85[CHB][hapmap]
rs12620001	0.85[CHB][hapmap]
rs12623699	0.85[CHB][hapmap]
rs12691630	1.00[CEU][hapmap];0.81[YRI][hapmap]
rs13394203	0.85[CHB][hapmap]
rs16847914	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16847915	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs16847916	0.93[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs16847932	0.81[CHB][hapmap]
rs16847936	0.84[CHB][hapmap]
rs16847942	0.85[CHB][hapmap]
rs2060591	1.00[CEU][hapmap]
rs2196354	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2217842	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs921279	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530398	chr2:142474842-142843839	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	esv2762863	chr2:142684812-142771707	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv997274	chr2:142760393-143599193	Enhancers Bivalent/Poised TSS Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv526107	chr2:142768518-142884248	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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