Variant report
| Variant | rs12623180 |
|---|---|
| Chromosome Location | chr2:167839415-167839416 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:9)
| rs_ID | r2[population] |
|---|---|
| rs10497304 | 0.88[CEU][hapmap] |
| rs10930259 | 1.00[MEX][hapmap] |
| rs10930260 | 0.88[CEU][hapmap];1.00[MEX][hapmap] |
| rs11889300 | 0.94[GIH][hapmap] |
| rs12616296 | 1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs16852806 | 0.94[GIH][hapmap] |
| rs17614860 | 0.88[CEU][hapmap] |
| rs58059370 | 0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs73973542 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv529384 | chr2:167143465-167958752 | Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
