Variant report

Variant	rs12623831
Chromosome Location	chr2:125481755-125481756
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10178842	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs10179213	1.00[CHB][hapmap]
rs10183674	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10184800	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10185492	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs10208814	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11123062	0.84[CEU][hapmap];1.00[CHB][hapmap]
rs11680115	0.88[CEU][hapmap];1.00[CHB][hapmap]
rs12468133	1.00[CHB][hapmap]
rs12612581	0.82[CHB][hapmap]
rs13396871	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs13400133	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs13409512	1.00[CHB][hapmap]
rs13427244	0.89[CEU][hapmap];1.00[CHB][hapmap]
rs6713505	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6736347	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs6760383	1.00[CHB][hapmap]
rs717601	0.83[CEU][hapmap];1.00[CHB][hapmap]
rs730468	0.82[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834359	chr2:125367872-125536022	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
2	nsv428727	chr2:125372897-125512949	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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