Variant report

Variant	rs12624403
Chromosome Location	chr20:40902053-40902054
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12625660	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs16986553	0.81[EUR][1000 genomes]
rs2223422	0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6093610	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6124420	0.81[EUR][1000 genomes]
rs6124431	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6130051	0.81[EUR][1000 genomes]
rs6130052	0.81[EUR][1000 genomes]
rs6130055	0.81[EUR][1000 genomes]
rs6130094	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8183826	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751913	chr20:40422982-41269321	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	nsv532516	chr20:40451059-41097155	Weak transcription Strong transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
3	esv3348773	chr20:40901692-40902272	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:40885400-40902800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr20:40896600-40905400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr20:40901600-40904000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr20:40901600-40905800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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